Hg_chrom7_TN10mRNA_13183
Organism: Heterodera glycines Gene Locus: chr7:201000-209541 Feature type: polypeptideProtein Sequence
Length: 836
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.113 | 0.739 | 0.866 | 1.356 | 1.35 | 0.684 | 1.136 | 1.196 | 1.665 | 0.598 | 0.844 | 1.495 | 0.943 | 1.025 | 1.196 | 1.0 | 0.961 | 0.552 | 0.281 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12422
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKELREFEEIIWRSTKK,KKELREFEEIIWRSTKKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.106
|
0.008
|
0.612
|
0.126
|
0.353
|
0.306
|
0.008
|
0.084
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002375
|
1.000
|
3.000
|
Hsc_gene_18174.t1;Hsc_gene_23340.t1;Hsc_gene_23340.t2
|
Hsc_gene_18174.t1;Hsc_gene_23340.t1;Hsc_gene_23340.t2;Hsc_gene_23341.t1
|
— |
O01514.5 Protein pthb1 homolog [Caenorhabditis elegans]
|
KAI1704609.1 protein pthb1 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0034464
|
GO:0005575_0.932|GO:0110165_0.927|GO:0016020_0.868|GO:0005622_0.857|GO:0005886_0.808|GO:0071944_0.808|GO:0043226_0.791|GO:0043227_0.749|GO:0008150_0.679|GO:0032991_0.653|GO:0009987_0.636|GO:0098590_0.618|GO:0043229_0.614|GO:0042995_0.604|GO:0120025_0.604|GO:0030990_0.561|GO:0005929_0.559|GO:0051179_0.526
|
IPR026511+1-714+|IPR028073+1-405+|IPR028074+498-716+
|
— |
PF14727+1-405+PTHB1_N-terminus|PF14728+498-716+PTHB1_C-terminus
|
— |
PTHR20991+1-714+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
768-836
|
1.000
|
1-767
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
92834.850
|
5.074
|
-17.500
|
23.445
|
9.330
|
47.967
|
52.033
|
11.244
|
12.201
|
49.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
471.583
|
595.249
|
333.182
|
122.562
|
50.141
|
34.571
|
98.362
|
128.224
|
6.474
|
1547.460
|
887.038
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.066
|
-2.417
|
-1.334
|
-1.321
|
— |
1.520
|
1.793
|
— |
-4.811
|
4.551
|
— | — | — |
No JSON data available for plots.