Hg_chrom7_TN10mRNA_13185
Organism: Heterodera glycines Gene Locus: chr7:214549-216593 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.002 | 0.93 | 1.063 | 0.849 | 0.872 | 1.026 | 0.44 | 1.077 | 2.325 | 1.123 | 0.979 | 0.724 | 2.051 | 0.947 | 1.444 | 0.967 | 0.404 | 0.513 | 2.367 | 0.724 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12424
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.669
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.565
|
0.294
|
0.033
|
0.561
|
0.110
|
0.061
|
0.063
|
0.009
|
0.188
|
0.241
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000012
|
42.000
|
12.000
|
Hsc_gene_11942.t1;Hsc_gene_23371.t1;Hsc_gene_23375.t1;Hsc_gene_23408.t1;Hsc_gene_23420.t1;Hsc_gene_23468.t1;Hsc_gene_23924.t1;Hsc_gene_24786.t1;Hsc_gene_24792.t1;Hsc_gene_24801.t1;Hsc_gene_5341.t1;Hsc_gene_5395.t1
|
— | — | — |
KAI3411082.1 hypothetical protein GPALN_003167 [Globodera pallida]
|
NLP46227
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;318-325
|
1.000
|
2-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
37788.770
|
9.009
|
11.500
|
26.769
|
15.077
|
44.000
|
56.000
|
15.692
|
11.077
|
42.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
58.217
|
28.874
|
47.860
|
70.735
|
141.786
|
112.974
|
138.438
|
70.789
|
18.412
|
11.594
|
14.516
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
1.156
|
0.673
|
0.972
|
-0.314
|
— |
-0.782
|
1.110
|
— | — | — | — | — |
No JSON data available for plots.