Hg_chrom7_TN10mRNA_13187
Organism: Heterodera glycines Gene Locus: chr7:230518-237142 Feature type: polypeptideProtein Sequence
Length: 926
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.892 | 0.879 | 0.903 | 0.521 | 1.332 | 1.744 | 0.759 | 1.89 | 0.576 | 1.284 | 0.654 | 1.525 | 0.69 | 1.038 | 1.433 | 1.666 | 0.903 | 0.654 | 0.249 | 0.413 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12426
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.733
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
KRLEGENKELRTKTK,RRQFKRLSPSRRSLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.156
|
0.025
|
0.746
|
0.071
|
0.163
|
0.206
|
0.048
|
0.212
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010933
|
1.000
|
1.000
|
Hsc_gene_23344.t1
|
— | — | — |
KAI1712821.1 trafficking kinesin-binding protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.939|GO:0110165_0.934|GO:0005622_0.898|GO:0008150_0.859|GO:0009987_0.820|GO:0016020_0.772|GO:0005737_0.749|GO:0051179_0.670|GO:0071944_0.652|GO:0051234_0.651|GO:0051641_0.646|GO:0006810_0.642|GO:0005886_0.629|GO:0043226_0.629|GO:0051649_0.611|GO:0043229_0.606|GO:0003674_0.604|GO:0005488_0.604|GO:0046907_0.598|GO:0005515_0.570|GO:0043227_0.561|GO:0043231_0.527
|
IPR006933+29-293_60-293+|IPR022154+595-666+|IPR051946+61-668+
|
SM01424+29-293+
|
PF04849+60-293+HAP1_N-terminal_conserved_region|PF12448+595-666+Kinesin_associated_protein
|
— |
PTHR15751+61-668+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-181;328-666;760-926
|
2.000
|
182-327;667-759
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
102137.600
|
6.625
|
2.500
|
28.078
|
7.991
|
55.832
|
44.168
|
15.119
|
12.959
|
51.188
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1318.366
|
2151.637
|
1370.680
|
1135.429
|
1106.077
|
883.077
|
1863.910
|
1624.239
|
366.238
|
1692.531
|
1124.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.879
|
-1.060
|
-0.164
|
— |
-0.310
|
1.088
|
0.779
|
— | — | — | — | — | — |
No JSON data available for plots.