Hg_chrom7_TN10mRNA_13190
Organism: Heterodera glycines Gene Locus: chr7:243543-246982 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.035 | 1.277 | 0.93 | 0.849 | 1.231 | 1.117 | 0.924 | 1.989 | 1.178 | 1.152 | 0.89 | 1.56 | 1.263 | 0.874 | 0.85 | 0.568 | 0.745 | 1.148 | 0.583 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12429
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.407
|
0.380
|
0.029
|
0.796
|
0.173
|
0.321
|
0.085
|
0.048
|
0.090
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001384
|
4.000
|
1.000
|
Hsc_gene_21438.t1
|
— | — |
I6LDA6.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Onchocerca volvulus]
|
KAH7729568.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like protein [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004619|GO:0005737|GO:0006007|GO:0030145|GO:0046872
|
GO:0003674_0.834|GO:0008150_0.820|GO:0003824_0.735|GO:0016853_0.590|GO:0004619_0.586|GO:0016866_0.586|GO:0016868_0.586|GO:0046537_0.549|GO:0005575_0.504|GO:0110165_0.504
|
IPR005995+3-526_8-523_9-523_9-524_10-523+|IPR006124+10-512+|IPR011258+86-302+|IPR017850+9-523_12-521+|IPR036646+81-313_81-315+
|
— |
PF01676+10-512+Metalloenzyme_superfamily|PF06415+86-302+BPG-independent_PGAM_N-terminus_(iPGM_N)
|
G3DSA:3.40.1450.10:FF:000002+81-318+2,3-bisphosphoglycerate-independent_phosphoglycerate_mutase
|
PTHR31637+8-523+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
522-528
|
1.000
|
1-521
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.503
|
58447.680
|
6.307
|
-2.500
|
26.515
|
11.364
|
44.886
|
55.114
|
14.015
|
12.500
|
50.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
1671.582
|
13856.267
|
539.258
|
791.935
|
1184.451
|
1057.782
|
726.778
|
912.170
|
72.955
|
107.715
|
92.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.913
|
-4.266
|
0.663
|
0.549
|
— |
-0.531
|
— | — | — | — | — | — | — |
No JSON data available for plots.