Hg_chrom7_TN10mRNA_13196
Organism: Heterodera glycines Gene Locus: chr7:270720-273534 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 1.193 | 0.932 | 1.238 | 0.427 | 1.315 | 1.099 | 1.538 | 1.709 | 1.317 | 1.243 | 0.603 | 1.282 | 0.888 | 0.209 | 1.099 | 0.673 | 0.699 | 2.367 | 1.357 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12435
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.660
|
0.151
|
0.022
|
0.601
|
0.431
|
0.181
|
0.108
|
0.021
|
0.109
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004486
|
2.000
|
1.000
|
Hsc_gene_23316.t1
|
— | — |
Q5ZIF3.1 Ufm1-specific protease 2 [Gallus gallus]
|
KAI3413750.1 WD and tetratricopeptide repeat protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.796|GO:0003674_0.694|GO:0008150_0.669|GO:0110165_0.666|GO:0005622_0.606|GO:0005737_0.592|GO:0003824_0.591|GO:0009987_0.589|GO:0008152_0.544|GO:0016787_0.536|GO:0044238_0.520|GO:0140096_0.518|GO:0008233_0.513|GO:0016020_0.503
|
IPR012462+21-120_121-181+|IPR051250+120-186+
|
— |
PF07910+21-120_121-181+Peptidase_family_C78
|
— |
PTHR48153+120-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
21784.040
|
8.154
|
6.000
|
20.000
|
15.385
|
42.051
|
57.949
|
12.308
|
7.692
|
49.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
89.510
|
44.962
|
90.140
|
104.927
|
94.592
|
99.244
|
81.907
|
76.240
|
9.498
|
162.476
|
96.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
1.085
|
0.329
|
— | — | — |
-0.485
|
— |
-4.224
|
— | — | — | — |
No JSON data available for plots.