SCN Proteipedia

Hg_chrom7_TN10mRNA_13202

Organism: Heterodera glycines Gene Locus: chr7:304334-308668 Feature type: polypeptide

Protein Sequence

Length: 421

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.746	0.829	1.123	0.655	1.029	1.035	0.396	1.425	1.372	1.477	1.152	0.978	1.518	0.868	1.503	1.086	0.545	0.756	1.827	1.048	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12441	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.950

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRGIHCWVADKKARA	—	—	—	—	—	—	0.000	—	—	0.817	0.340	0.007	0.575	0.090	0.062	0.068	0.012	0.020	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000244	8.000	2.000	Hsc_gene_23364.t1;Hsc_gene_2961.t1	—	—	P34471.1 DNA primase small subunit [Caenorhabditis elegans]	KAI1726804.1 DNA primase small subunit domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003896\|GO:0006269	GO:0008150_0.945\|GO:0009987_0.888\|GO:0008152_0.815\|GO:0005575_0.794\|GO:0044238_0.794\|GO:0009058_0.790\|GO:0044237_0.787\|GO:0110165_0.787\|GO:0043170_0.776\|GO:0044249_0.761\|GO:0003674_0.747\|GO:0005622_0.745\|GO:0009059_0.745\|GO:0006139_0.739\|GO:0034654_0.721\|GO:0090304_0.716\|GO:0016020_0.712\|GO:0141187_0.709\|GO:0043226_0.697\|GO:0006259_0.682\|GO:0043229_0.679\|GO:0071897_0.675\|GO:0006260_0.674\|GO:0006261_0.670\|GO:0043227_0.647\|GO:0003824_0.642\|GO:0043231_0.631\|GO:0016740_0.586\|GO:0016070_0.583\|GO:0032774_0.581\|GO:0032991_0.564\|GO:0006270_0.553\|GO:0006269_0.547\|GO:0016772_0.546\|GO:0043228_0.546\|GO:0140640_0.545\|GO:0043232_0.539\|GO:0140098_0.538\|GO:0016779_0.537\|GO:0005634_0.535\|GO:0003896_0.530\|GO:0003899_0.530\|GO:0034062_0.530\|GO:0097747_0.530	IPR002755+121-354+\|IPR014052+19-364_27-363+	—	PF01896+121-354+DNA_primase_small_subunit	G3DSA:3.90.920.10:FF:000003+12-421+DNA_primase	PTHR10536+14-417+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-421	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	49278.780	9.309	17.000	30.166	14.252	48.694	51.306	17.815	12.352	41.805

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	115.385	205.753	164.496	143.448	108.613	85.347	137.527	242.607	7.466	91.288	55.365

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.552	-0.657	—	-0.433	-0.333	0.696	1.402	-0.679	-3.772	4.478	—	—	—

No JSON data available for plots.

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