Hg_chrom7_TN10mRNA_13204
Organism: Heterodera glycines Gene Locus: chr7:313425-314591 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 0.906 | 2.007 | 0.896 | 0.758 | 0.833 | 0.464 | 1.299 | 1.299 | 0.878 | 1.181 | 3.056 | 1.984 | 0.749 | 1.325 | 0.649 | 0.852 | 1.181 | 0.0 | 0.955 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12443
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
19-54
|
0.983
|
6-35
|
0.976
|
— | — |
0.000
|
— | — |
0.063
|
0.970
|
0.013
|
0.161
|
0.011
|
0.029
|
0.054
|
0.012
|
0.052
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003140
|
2.000
|
1.000
|
Hsc_gene_25432.t1
|
— | — |
Q0MQC1.1 Acyl carrier protein, mitochondrial [Pongo pygmaeus]
|
KAF7633803.1 Acyl carrier protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006633
|
GO:0005575_0.874|GO:0110165_0.874|GO:0005622_0.828|GO:0005737_0.802|GO:0008150_0.802|GO:0016020_0.742|GO:0009987_0.719|GO:0043226_0.701|GO:0043229_0.695|GO:0008152_0.679|GO:0043227_0.675|GO:0043231_0.671|GO:0044238_0.655|GO:0009058_0.637|GO:0044237_0.637|GO:0003674_0.593|GO:0044249_0.537|GO:0005488_0.522|GO:0005739_0.503|GO:0044281_0.501
|
IPR003231+57-153_76-150+|IPR009081+75-150_90-146+|IPR036736+64-154_73-149+
|
— |
PF00550+90-146+Phosphopantetheine_attachment_site
|
— |
PTHR20863+57-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-154
|
9i4i_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
17929.620
|
6.478
|
0.000
|
32.468
|
12.987
|
49.351
|
50.649
|
16.883
|
15.584
|
47.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
824.777
|
363.403
|
705.331
|
856.543
|
1208.287
|
995.048
|
845.625
|
713.950
|
505.996
|
1095.834
|
843.046
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
1.100
|
0.389
|
0.464
|
-0.266
|
-0.224
|
-0.586
|
0.388
|
— | — | — | — | — |
No JSON data available for plots.