Hg_chrom7_TN10mRNA_13205
Organism: Heterodera glycines Gene Locus: chr7:315277-320126 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.008 | 1.416 | 1.006 | 0.573 | 1.169 | 1.23 | 0.329 | 1.199 | 1.435 | 1.197 | 0.587 | 1.519 | 1.948 | 0.39 | 1.205 | 0.975 | 0.907 | 1.202 | 0.852 | 0.868 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12444
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRRR,RRYSLQNEKEQYAEKRRKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.217
|
0.372
|
0.011
|
0.150
|
0.707
|
0.236
|
0.360
|
0.030
|
0.347
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004493
|
2.000
|
1.000
|
Hsc_gene_23362.t1
|
Hsc_gene_23362.t1
|
— |
Q9U3H8.1 Protein TAPT1 homolog [Caenorhabditis elegans]
|
KAH7726659.1 Protein F26F2.7 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.882|GO:0005575_0.809|GO:0110165_0.809|GO:0016020_0.768|GO:0071944_0.761|GO:0005886_0.757|GO:0005622_0.697|GO:0009987_0.692|GO:0043226_0.659|GO:0043227_0.618|GO:0051179_0.564|GO:0043229_0.519|GO:0005737_0.510|GO:0006810_0.506|GO:0051234_0.506
|
IPR008010+7-521_213-514+
|
— |
PF05346+213-514+Eukaryotic_membrane_protein_family
|
— |
PTHR13317+7-521+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-122
|
1.000
|
123-542
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
62206.870
|
5.373
|
-8.500
|
24.723
|
13.469
|
47.970
|
52.030
|
12.177
|
12.546
|
47.048
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
1803.334
|
682.211
|
547.943
|
551.145
|
729.403
|
1069.708
|
1294.176
|
1040.752
|
649.262
|
5184.387
|
3240.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.545
|
-0.445
|
— |
0.373
|
0.567
|
0.285
|
— |
0.458
|
-3.093
|
— | — | — | — |
No JSON data available for plots.