Hg_chrom7_TN10mRNA_13207
Organism: Heterodera glycines Gene Locus: chr7:322802-324072 Feature type: polypeptideProtein Sequence
Length: 100
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 0.698 | 1.273 | 0.345 | 1.333 | 2.564 | 0.357 | 2.0 | 1.556 | 1.486 | 1.061 | 1.765 | 1.111 | 1.538 | 1.429 | 0.286 | 0.164 | 0.152 | 2.308 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12446
|
— | — |
2.111
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
2.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.199
|
0.930
|
0.012
|
0.388
|
0.051
|
0.091
|
0.055
|
0.030
|
0.081
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004495
|
2.000
|
1.000
|
Hsc_gene_23360.t1
|
Hsc_gene_23360.t1
|
— | — |
KHN80879.1 putative 28S ribosomal protein S23, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005739|GO:0005840|GO:0006412
|
GO:0005575_0.930|GO:0110165_0.926|GO:0005622_0.876|GO:0016020_0.833|GO:0043226_0.829|GO:0043229_0.815|GO:0005737_0.799|GO:0043227_0.765|GO:0043231_0.762|GO:0005739_0.574|GO:0003674_0.515|GO:0005488_0.515
|
IPR019520+6-94+|IPR023611+6-94+
|
— |
PF10484+6-94+Mitochondrial_ribosomal_protein_S23
|
— |
PTHR15925+6-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
81-100
|
1.000
|
1-80
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
12101.870
|
6.871
|
1.000
|
33.000
|
15.000
|
49.000
|
51.000
|
18.000
|
15.000
|
32.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
350.006
|
201.171
|
330.671
|
410.716
|
495.670
|
411.777
|
274.219
|
325.874
|
97.778
|
539.155
|
349.993
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.489
|
0.893
|
0.420
|
0.239
|
-0.253
|
-0.577
|
-0.439
|
— |
-2.598
|
— | — | — | — |
No JSON data available for plots.