Hg_chrom7_TN10mRNA_13208
Organism: Heterodera glycines Gene Locus: chr7:324234-330526 Feature type: polypeptideProtein Sequence
Length: 752
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 1.423 | 1.161 | 0.275 | 0.931 | 0.989 | 0.776 | 1.263 | 1.507 | 1.33 | 0.625 | 1.408 | 1.884 | 1.023 | 1.14 | 0.779 | 0.523 | 0.967 | 1.023 | 1.33 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.850
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KRRS
|
— | — | — | — |
1-26
|
0.906
|
0.808
|
0.000
|
0.000
|
0.330
|
0.136
|
0.053
|
0.382
|
0.519
|
0.239
|
0.363
|
0.018
|
0.250
|
0.294
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010938
|
1.000
|
1.000
|
Hsc_gene_23358.t1
|
Hsc_gene_23358.t1;Hsc_gene_23359.t1
|
— |
Q20679.1 Multifunctional procollagen lysine hydroxylase and glycosyltransferase [Caenorhabditis elegans]
|
KAH7723081.1 Oxoglutarate/iron-dependent dioxygenase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005506|GO:0016705|GO:0031418
|
GO:0008150_0.887|GO:0009987_0.750|GO:0003674_0.696|GO:0005575_0.642|GO:0110165_0.632|GO:0003824_0.630|GO:0008152_0.541|GO:0044238_0.519|GO:0071944_0.512|GO:0016020_0.510
|
IPR005123+661-752+|IPR006620+577-751+|IPR029044+295-500+|IPR044861+663-752+|IPR050757+62-752+
|
SM00702+577-751+
|
PF03171+663-752+2OG-Fe(II)_oxygenase_superfamily
|
— |
PTHR10730+62-752+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-752
|
6wfv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
86028.150
|
5.824
|
-7.500
|
24.202
|
15.160
|
42.819
|
57.181
|
12.234
|
11.968
|
46.676
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1111.228
|
676.742
|
685.663
|
897.153
|
899.690
|
856.009
|
902.057
|
816.329
|
381.402
|
2425.453
|
1549.431
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.209
|
0.270
|
0.495
|
— | — | — | — |
0.286
|
-2.798
|
— | — | — | — |