Hg_chrom7_TN10mRNA_13217
Organism: Heterodera glycines Gene Locus: chr7:405557-409149 Feature type: polypeptideProtein Sequence
Length: 447
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 1.405 | 0.814 | 0.463 | 0.708 | 1.09 | 0.533 | 1.007 | 1.491 | 1.512 | 1.322 | 1.579 | 1.491 | 0.946 | 1.963 | 1.055 | 0.807 | 0.508 | 1.377 | 0.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12456
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,RKKK,KRRSVRVATKMNRILRK,RRKQWHGTTDNRTRRKNRS,RKQWHGTTDNRTRRKNRSK
|
43-63
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.814
|
0.113
|
0.032
|
0.216
|
0.043
|
0.024
|
0.022
|
0.013
|
0.134
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002290
|
3.000
|
1.000
|
Hsc_gene_16901.t1
|
Hsc_gene_16901.t1
|
— | — |
KAI3416240.1 hypothetical protein GPALN_005785 [Globodera pallida]
|
MBD3307796
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;337-447
|
1.000
|
4-336
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
51981.590
|
11.221
|
47.500
|
29.083
|
10.515
|
51.678
|
48.322
|
20.358
|
8.725
|
42.058
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
10.442
|
10.219
|
18.213
|
14.439
|
7.351
|
8.998
|
11.141
|
21.007
|
3.792
|
8.577
|
6.526
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-1.005
|
— | — |
1.123
|
-0.778
|
— | — | — | — | — |
No JSON data available for plots.