Hg_chrom7_TN10mRNA_13224
Organism: Heterodera glycines Gene Locus: chr7:438276-454759 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 1.1 | 1.118 | 0.571 | 1.182 | 1.455 | 0.619 | 1.655 | 0.998 | 1.182 | 0.86 | 2.364 | 1.182 | 0.455 | 1.303 | 0.946 | 0.736 | 0.716 | 1.819 | 0.904 | 0.0 |
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Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12463
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.437
|
0.391
|
0.055
|
0.466
|
0.065
|
0.115
|
0.050
|
0.058
|
0.154
|
0.312
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000908
|
1.000
|
5.000
|
Hsc_gene_11182.t1;Hsc_gene_22697.t1;Hsc_gene_22697.t2;Hsc_gene_23352.t1;Hsc_gene_23352.t2
|
Hsc_gene_22696.t1;Hsc_gene_23364.t1;Hsc_gene_2961.t1
|
— | — |
KAF7635640.1 DNA primase [Meloidogyne graminicola]
|
WP_051375538
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
— |
IPR000642+241-339+|IPR037219+238-423_240-339+
|
— |
PF01434+241-339+Peptidase_family_M41
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
48645.130
|
6.733
|
2.000
|
28.605
|
13.002
|
50.118
|
49.882
|
15.366
|
13.239
|
44.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
883.856
|
439.867
|
762.802
|
645.290
|
609.637
|
1582.974
|
549.794
|
4666.887
|
199.702
|
245.625
|
225.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
0.416
|
— | — |
1.391
|
-1.516
|
1.453
|
-2.942
|
— | — | — | — | — |
No JSON data available for plots.