Hg_chrom7_TN10mRNA_13228
Organism: Heterodera glycines Gene Locus: chr7:464210-465528 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.652 | 1.189 | 0.967 | 1.402 | 3.115 | 0.334 | 1.402 | 1.038 | 1.768 | 1.133 | 2.199 | 0.779 | 1.438 | 1.144 | 0.134 | 0.0 | 0.283 | 2.157 | 1.1 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12467
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.466
|
0.487
|
0.015
|
0.503
|
0.050
|
0.090
|
0.039
|
0.002
|
0.079
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004495
|
2.000
|
1.000
|
Hsc_gene_23360.t1
|
Hsc_gene_23360.t1
|
— | — |
KHN80879.1 putative 28S ribosomal protein S23, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005739|GO:0005840|GO:0006412
|
GO:0005575_0.927|GO:0110165_0.923|GO:0005622_0.878|GO:0016020_0.834|GO:0043226_0.829|GO:0043229_0.813|GO:0005737_0.804|GO:0043227_0.771|GO:0043231_0.764|GO:0005739_0.574|GO:0003674_0.520|GO:0005488_0.520
|
IPR019520+27-101+|IPR023611+27-101+
|
— |
PF10484+27-101+Mitochondrial_ribosomal_protein_S23
|
— |
PTHR15925+27-101+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-107
|
1.000
|
1-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
12806.780
|
6.222
|
-0.500
|
30.841
|
12.150
|
46.729
|
53.271
|
15.888
|
14.953
|
32.710
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
94.105
|
24.561
|
32.024
|
37.701
|
34.445
|
30.325
|
83.971
|
85.858
|
134.473
|
187.524
|
164.788
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.482
|
— | — | — |
1.480
|
1.399
|
— | — | — |
-2.260
|
— | — |
No JSON data available for plots.