Hg_chrom7_TN10mRNA_13229
Organism: Heterodera glycines Gene Locus: chr7:465690-467137 Feature type: polypeptideProtein Sequence
Length: 160
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 1.308 | 1.136 | 0.647 | 0.729 | 0.641 | 0.521 | 0.625 | 1.667 | 1.689 | 0.758 | 1.103 | 2.083 | 0.962 | 1.658 | 0.714 | 0.717 | 1.231 | 1.442 | 0.368 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12468
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-26
|
0.889
|
0.628
|
0.000
|
0.000
|
0.309
|
0.273
|
0.029
|
0.433
|
0.620
|
0.173
|
0.205
|
0.006
|
0.070
|
0.561
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004273
|
2.000
|
1.000
|
Hsc_gene_23359.t1
|
— | — |
Q20679.1 Multifunctional procollagen lysine hydroxylase and glycosyltransferase [Caenorhabditis elegans]
|
KAH7723081.1 Oxoglutarate/iron-dependent dioxygenase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.861|GO:0009987_0.734|GO:0005575_0.674|GO:0110165_0.667|GO:0003674_0.652|GO:0003824_0.556|GO:0016020_0.550|GO:0005622_0.533|GO:0005737_0.527|GO:0008152_0.517|GO:0044238_0.503
|
IPR050757+62-124+
|
— | — | — |
PTHR10730+62-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
6wfv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
18426.580
|
9.250
|
5.000
|
25.000
|
11.875
|
42.500
|
57.500
|
14.375
|
10.625
|
46.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
brown
|
12.005
|
9.028
|
11.945
|
10.469
|
7.258
|
11.334
|
33.126
|
28.110
|
14.396
|
0.000
|
6.170
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.555
|
1.212
|
— | — | — | — | — | — |