Hg_chrom7_TN10mRNA_13240
Organism: Heterodera glycines Gene Locus: chr7:564451-567476 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 0.788 | 1.541 | 0.779 | 2.166 | 1.883 | 1.412 | 1.412 | 0.879 | 0.763 | 0.342 | 0.997 | 0.942 | 0.0 | 1.268 | 0.726 | 0.556 | 1.198 | 1.304 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12479
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.721
|
0.192
|
0.009
|
0.449
|
0.102
|
0.125
|
0.098
|
0.040
|
0.093
|
0.123
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002378
|
3.000
|
1.000
|
Hsc_gene_23223.t1
|
— | — |
Q8BIZ6.1 Smad nuclear-interacting protein 1 [Mus musculus]
|
KAI6207429.1 3-methylcrotonyl-CoA carboxylase 2 [Aphelenchoides besseyi]
|
No
|
-0.680
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0003674_0.868|GO:0005575_0.867|GO:0110165_0.858|GO:0009987_0.853|GO:0005488_0.817|GO:0065007_0.810|GO:0050789_0.789|GO:0005622_0.783|GO:0008152_0.783|GO:0050794_0.774|GO:0044237_0.754|GO:0016020_0.740|GO:0043170_0.739|GO:0009058_0.736|GO:0044249_0.724|GO:0048519_0.719|GO:0043226_0.718|GO:0009059_0.717|GO:0010467_0.717|GO:0019222_0.712|GO:0031323_0.712|GO:0048523_0.709|GO:0060255_0.707|GO:0009889_0.698|GO:0031326_0.698|GO:0010556_0.697|GO:0010468_0.694|GO:0043229_0.688|GO:0043227_0.680|GO:0043231_0.658|GO:0005634_0.601|GO:0044238_0.518
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;46-90;133-177
|
2.000
|
7-45;91-132
|
8i0r_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
19613.240
|
4.078
|
-20.500
|
32.768
|
9.605
|
51.977
|
48.023
|
11.299
|
21.469
|
50.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
magenta
|
168.695
|
264.768
|
271.557
|
194.511
|
198.959
|
153.126
|
259.349
|
187.343
|
9.009
|
157.678
|
93.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.194
|
-0.582
|
-0.372
|
— |
-0.364
|
0.772
|
— |
0.614
|
— |
4.603
|
— | — | — |
No JSON data available for plots.