Hg_chrom7_TN10mRNA_13242
Organism: Heterodera glycines Gene Locus: chr7:571723-573240 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.296 | 1.226 | 0.607 | 0.88 | 0.602 | 0.489 | 1.026 | 1.694 | 1.11 | 0.933 | 1.725 | 2.118 | 0.959 | 1.197 | 0.964 | 0.865 | 0.8 | 2.256 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12481
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.569
|
0.222
|
0.068
|
0.549
|
0.141
|
0.061
|
0.090
|
0.016
|
0.315
|
0.347
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000237
|
5.000
|
5.000
|
Hsc_gene_10887.t1;Hsc_gene_2156.t1;Hsc_gene_25051.t1;Hsc_gene_3476.t1;Hsc_gene_3485.t1
|
Hsc_gene_13438.t1;Hsc_gene_2243.t1;Hsc_gene_25051.t1;Hsc_gene_26240.t1;Hsc_gene_26241.t1;Hsc_gene_26245.t1;Hsc_gene_26246.t1;Hsc_gene_3476.t1;Hsc_gene_3485.t1;Hsc_gene_5639.t1
|
— | — |
KAI3411121.1 hypothetical protein GPALN_003204 [Globodera pallida]
|
CAB4284822
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
39450.390
|
7.367
|
3.500
|
26.100
|
14.663
|
46.041
|
53.959
|
14.076
|
12.023
|
46.921
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
99.661
|
8.957
|
7.561
|
24.994
|
120.956
|
302.130
|
29.115
|
289.518
|
0.000
|
142.306
|
81.318
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.343
|
1.839
|
2.246
|
1.334
|
-3.367
|
— |
-3.169
|
— |
5.500
|
— | — | — |
No JSON data available for plots.