Hg_chrom7_TN10mRNA_13243
Organism: Heterodera glycines Gene Locus: chr7:578525-579985 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.984 | 1.251 | 0.0 | 1.94 | 0.95 | 0.882 | 1.058 | 0.823 | 1.073 | 1.924 | 0.622 | 1.029 | 0.305 | 1.512 | 0.831 | 0.607 | 0.882 | 0.0 | 0.311 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12482
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKR,KRAADVLKRLRRRHL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.734
|
0.114
|
0.101
|
0.233
|
0.049
|
0.070
|
0.097
|
0.205
|
0.117
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010943
|
1.000
|
1.000
|
Hsc_gene_19916.t1
|
Hsc_gene_19916.t1
|
— | — |
KAH7719981.1 DNA excision repair protein ERCC-6 [Aphelenchus avenae]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.936|GO:0110165_0.935|GO:0005622_0.916|GO:0008150_0.900|GO:0009987_0.857|GO:0065007_0.789|GO:0050789_0.782|GO:0050794_0.765|GO:0008152_0.755|GO:0044237_0.755|GO:0009058_0.753|GO:0009059_0.753|GO:0010467_0.753|GO:0043170_0.753|GO:0044249_0.753|GO:0044238_0.752|GO:0006139_0.749|GO:0050896_0.744|GO:0034654_0.731|GO:0090304_0.731|GO:0051716_0.725|GO:0006950_0.723|GO:0019222_0.721|GO:0032501_0.720|GO:0032502_0.720|GO:0141187_0.720|GO:0031323_0.719|GO:0016070_0.718|GO:0048518_0.718|GO:0032774_0.716|GO:0060255_0.715|GO:0048522_0.713|GO:0080090_0.712|GO:0009889_0.709|GO:0031326_0.709|GO:0033554_0.707|GO:0010468_0.703|GO:0010556_0.703|GO:0009628_0.702|GO:0042221_0.700|GO:0009893_0.697|GO:0023052_0.696|GO:0019219_0.695|GO:0007154_0.694|GO:0010604_0.693|GO:0031325_0.693|GO:0009891_0.691|GO:0031328_0.691|GO:0051252_0.691|GO:0006351_0.690|GO:0006355_0.689|GO:0007165_0.689|GO:1901700_0.689|GO:2001141_0.689|GO:0010557_0.687|GO:0006259_0.685|GO:0006352_0.685|GO:0016072_0.685|GO:0040007_0.684|GO:0045935_0.684|GO:0008219_0.683|GO:0006915_0.682|GO:0006974_0.682|GO:0012501_0.682|GO:0051254_0.682|GO:0006366_0.681|GO:0006367_0.681|GO:0035556_0.680|GO:0006357_0.679|GO:0009314_0.679|GO:0045893_0.679|GO:1902680_0.679|GO:0006979_0.678|GO:0009416_0.678|GO:0042592_0.678|GO:0048589_0.678|GO:0006281_0.676|GO:0006360_0.675|GO:0141124_0.675|GO:0009411_0.674|GO:0045944_0.674|GO:0097190_0.674|GO:0000165_0.670|GO:0000302_0.670|GO:0000303_0.670|GO:0000305_0.670|GO:0001894_0.670|GO:0001895_0.670|GO:0006283_0.670|GO:0006289_0.670|GO:0006290_0.670|GO:0006354_0.670|GO:0006362_0.670|GO:0007254_0.670|GO:0008630_0.670|GO:0009303_0.670|GO:0009636_0.670|GO:0010165_0.670|GO:0010212_0.670|GO:0010224_0.670|GO:0010332_0.670|GO:0035264_0.670|GO:0042790_0.670|GO:0045494_0.670|GO:0048871_0.670|GO:0060249_0.670|GO:0060260_0.670|GO:0060261_0.670|GO:0097193_0.670|GO:2000142_0.670|GO:2000144_0.670
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;152-189
|
1.000
|
30-151
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
21209.850
|
9.622
|
5.000
|
40.741
|
6.878
|
58.201
|
41.799
|
22.222
|
18.519
|
44.974
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
490.288
|
988.035
|
690.612
|
500.223
|
409.469
|
368.067
|
423.907
|
682.768
|
723.871
|
78.452
|
355.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.746
|
-1.119
|
-0.357
|
-0.320
|
— |
0.214
|
0.788
|
-0.546
|
3.074
|
— | — | — | — |
No JSON data available for plots.