Hg_chrom7_TN10mRNA_13244
Organism: Heterodera glycines Gene Locus: chr7:580459-584712 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 0.68 | 0.725 | 0.642 | 1.108 | 0.818 | 1.045 | 0.931 | 1.3 | 1.402 | 0.403 | 1.564 | 1.182 | 1.125 | 1.52 | 0.95 | 1.134 | 0.967 | 0.409 | 0.86 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12483
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.409
|
0.418
|
0.043
|
0.711
|
0.086
|
0.015
|
0.024
|
0.032
|
0.060
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002376
|
3.000
|
1.000
|
Hsc_gene_23357.t1
|
Hsc_gene_23357.t1
|
— |
Q20680.1 Protein MTO1 homolog, mitochondrial [Caenorhabditis elegans]
|
KAI3413727.1 Mitochondrial Translation Optimization [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008033|GO:0050660
|
GO:0005575_0.762|GO:0110165_0.760|GO:0005622_0.672|GO:0008150_0.672|GO:0005737_0.632|GO:0009987_0.605|GO:0016020_0.579|GO:0008152_0.532|GO:0043226_0.513|GO:0044238_0.506|GO:0044237_0.503
|
IPR002218+4-370+|IPR020595+290-313+|IPR036188+1-136_50-178_53-313_229-372+|IPR040131+5-319+
|
— |
PF01134+5-319+Glucose_inhibited_division_protein_A
|
— |
PTHR11806+4-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
41246.320
|
6.822
|
1.500
|
22.606
|
9.574
|
42.287
|
57.713
|
11.968
|
10.638
|
51.596
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
64.448
|
21.799
|
19.536
|
15.174
|
12.770
|
9.794
|
53.731
|
81.543
|
2.056
|
200.038
|
115.188
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.660
|
— | — | — |
2.469
|
2.965
|
— |
-6.628
|
— | — | — | — |
No JSON data available for plots.