Hg_chrom7_TN10mRNA_13245
Organism: Heterodera glycines Gene Locus: chr7:585567-587323 Feature type: polypeptideProtein Sequence
Length: 223
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.678 | 1.669 | 0.652 | 1.856 | 0.523 | 0.69 | 0.587 | 0.897 | 1.295 | 0.97 | 0.815 | 2.638 | 0.997 | 1.035 | 2.105 | 0.833 | 1.397 | 0.611 | 2.415 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12484
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.494
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
RRNMRVHKLKNCARKRAWR
|
4-26
|
0.919
|
— | — | — | — |
0.000
|
— | — |
0.386
|
0.634
|
0.021
|
0.338
|
0.299
|
0.133
|
0.109
|
0.047
|
0.179
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002376
|
3.000
|
1.000
|
Hsc_gene_23357.t1
|
Hsc_gene_23357.t1
|
— |
Q39PR0.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [Geobacter metallireducens GS-15]
|
KAI3413727.1 Mitochondrial Translation Optimization [Globodera pallida]
|
WP_011382451
|
0.770
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008033|GO:0050660
|
GO:0005575_0.758|GO:0110165_0.752|GO:0008150_0.672|GO:0005622_0.669|GO:0009987_0.611|GO:0005737_0.567|GO:0008152_0.543|GO:0043170_0.536|GO:0016020_0.532|GO:0044238_0.523|GO:0044237_0.516|GO:0043226_0.515|GO:0009058_0.514|GO:0044249_0.511|GO:0043229_0.508|GO:0009059_0.501
|
IPR002218+1-63+|IPR036188+1-66+
|
— | — | — |
PTHR11806+1-63+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-223
|
2zxi_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.527
|
25742.970
|
10.503
|
22.000
|
24.215
|
10.314
|
48.430
|
51.570
|
17.489
|
6.726
|
50.673
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
57.373
|
15.604
|
23.608
|
21.966
|
26.267
|
17.326
|
18.451
|
29.613
|
60.841
|
148.061
|
110.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.586
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.