Hg_chrom7_TN10mRNA_13253
Organism: Heterodera glycines Gene Locus: chr7:606647-613914 Feature type: polypeptideProtein Sequence
Length: 505
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 0.921 | 0.54 | 0.819 | 0.792 | 0.508 | 0.967 | 0.891 | 1.056 | 1.846 | 0.51 | 1.747 | 1.375 | 0.876 | 0.808 | 1.188 | 1.363 | 0.9 | 1.676 | 0.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12492
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.054
|
0.087
|
0.024
|
0.131
|
0.311
|
0.555
|
0.413
|
0.067
|
0.587
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002379
|
1.000
|
3.000
|
Hsc_gene_23374.t1;Hsc_gene_23374.t2;Hsc_gene_23374.t3
|
— | — |
Q3LFN0.2 Riboflavin transporter rft-1 [Caenorhabditis elegans]
|
KAI1722910.1 riboflavin transporter 2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0032217|GO:0032218
|
GO:0008150_0.961|GO:0009987_0.917|GO:0006810_0.866|GO:0051179_0.866|GO:0051234_0.866|GO:0003674_0.857|GO:0055085_0.805|GO:0005215_0.745|GO:0022857_0.745|GO:0005575_0.743|GO:0110165_0.743|GO:0071705_0.722|GO:0071944_0.714|GO:0016020_0.712|GO:0005886_0.702|GO:0015711_0.694|GO:0032218_0.670|GO:0035461_0.670|GO:0051180_0.670|GO:0008514_0.662|GO:0032217_0.650|GO:0090482_0.650
|
IPR009357+8-500_8-505+|IPR036259+5-220+
|
— |
PF06237+8-500+Solute_carrier_family_52,_riboflavin_transporter
|
— |
PTHR12929+8-505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
218-325
|
2.000
|
1-217;326-505
|
8xsn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
55212.980
|
6.920
|
2.500
|
16.832
|
11.881
|
39.406
|
60.594
|
9.109
|
7.723
|
52.673
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1592.232
|
1030.503
|
780.360
|
799.220
|
782.005
|
924.602
|
1454.993
|
874.689
|
853.078
|
3833.814
|
2556.356
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.631
|
-0.504
|
0.143
|
— |
0.257
|
0.664
|
— |
0.875
|
— | — | — | — | — |
No JSON data available for plots.