Hg_chrom7_TN10mRNA_13259
Organism: Heterodera glycines Gene Locus: chr7:634689-641627 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 1.424 | 0.928 | 0.88 | 0.893 | 0.981 | 0.425 | 1.276 | 1.417 | 1.138 | 0.657 | 2.251 | 2.055 | 0.981 | 1.302 | 0.838 | 0.585 | 0.928 | 3.14 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12498
|
— | — |
0.333
|
— | — |
1.000
|
— | — |
1.000
|
1.000
|
— | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKWFTRFNNGDTSLKPRPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.671
|
0.163
|
0.044
|
0.358
|
0.113
|
0.045
|
0.035
|
0.052
|
0.193
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010947
|
1.000
|
1.000
|
Hsc_gene_6007.t1
|
— | — | — |
KAI3414311.1 hypothetical protein GPALN_011769 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR041426+15-58+
|
— |
PF17906+15-58+HTH_domain_in_Mos1_transposase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
46138.280
|
7.606
|
6.000
|
23.724
|
16.837
|
43.112
|
56.888
|
13.265
|
10.459
|
44.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
48.862
|
65.505
|
51.389
|
44.831
|
16.251
|
14.038
|
33.239
|
22.384
|
10.189
|
113.267
|
69.091
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.579
|
-0.684
|
— |
-1.496
|
— |
1.250
|
— |
0.712
|
— | — | — | — | — |
No JSON data available for plots.