Hg_chrom7_TN10mRNA_13263
Organism: Heterodera glycines Gene Locus: chr7:650886-653830 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.453 | 0.595 | 0.826 | 0.686 | 0.852 | 1.748 | 0.744 | 0.568 | 0.568 | 0.921 | 0.646 | 1.671 | 1.894 | 0.983 | 1.855 | 1.177 | 1.118 | 0.689 | 0.437 | 0.418 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12502
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRK,SRRVRRGTKKLAKK
|
6-26
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.194
|
0.357
|
0.092
|
0.669
|
0.114
|
0.293
|
0.315
|
0.037
|
0.463
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010949
|
1.000
|
1.000
|
Hsc_gene_23389.t1
|
Hsc_gene_23389.t1
|
— | — |
KAI1723344.1 kv channel-interacting protein 1 [Ditylenchus destructor]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.827|GO:0110165_0.812|GO:0008150_0.804|GO:0003674_0.769|GO:0009987_0.749|GO:0005488_0.724|GO:0016020_0.703|GO:0065007_0.669|GO:0050789_0.657|GO:0071944_0.599|GO:0050794_0.598|GO:0005886_0.579|GO:0005622_0.565|GO:0005515_0.533|GO:0051179_0.509
|
IPR002048+312-347+|IPR011992+76-344+|IPR028846+71-349+
|
— | — | — |
PTHR23055+71-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-80
|
1.000
|
81-352
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
38912.080
|
10.106
|
15.000
|
24.148
|
9.943
|
48.580
|
51.420
|
14.489
|
9.659
|
52.557
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
353.265
|
704.632
|
901.992
|
277.339
|
86.988
|
94.442
|
41.147
|
446.958
|
155.415
|
471.413
|
335.985
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.127
|
-1.482
|
-1.593
|
-1.704
|
— |
-1.190
|
2.143
|
-3.302
|
— | — | — | — | — |
No JSON data available for plots.