Hg_chrom7_TN10mRNA_13264
Organism: Heterodera glycines Gene Locus: chr7:660106-673070 Feature type: polypeptideProtein Sequence
Length: 1,333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.396 | 1.378 | 1.009 | 0.724 | 0.938 | 1.635 | 0.929 | 1.463 | 0.483 | 0.791 | 0.727 | 2.295 | 0.667 | 1.14 | 1.026 | 1.329 | 1.193 | 0.58 | 0.346 | 0.221 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12503
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRTKRKQ,RRTKGVPKSGNAKKAVKKASSSA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.862
|
0.129
|
0.008
|
0.383
|
0.030
|
0.037
|
0.037
|
0.013
|
0.105
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010950
|
1.000
|
1.000
|
Hsc_gene_23391.t1
|
— | — | — |
KAF7635646.1 SAP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003034+132-165_132-166+|IPR036361+114-174_129-166+|IPR043451+49-291+
|
SM00513+132-166+
|
PF02037+132-165+SAP_domain
|
— |
PTHR22793+49-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-294;331-730;785-1333
|
2.000
|
295-330;731-784
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
142055.280
|
6.566
|
1.500
|
23.931
|
6.527
|
52.813
|
47.187
|
12.753
|
11.178
|
59.715
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
725.866
|
4080.598
|
776.348
|
397.755
|
108.906
|
314.994
|
122.773
|
1372.395
|
118.561
|
396.581
|
277.430
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.623
|
-3.496
|
-0.857
|
-1.899
|
1.546
|
-1.351
|
2.027
|
-3.346
|
— | — | — | — | — |
No JSON data available for plots.