Hg_chrom7_TN10mRNA_13279
Organism: Heterodera glycines Gene Locus: chr7:711864-713382 Feature type: polypeptideProtein Sequence
Length: 356
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.372 | 1.175 | 0.775 | 0.843 | 0.936 | 0.401 | 0.983 | 1.998 | 1.101 | 0.936 | 1.157 | 2.107 | 1.134 | 1.49 | 0.963 | 0.507 | 0.596 | 1.729 | 0.744 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12518
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKWTLKPIQIRRKNG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.220
|
0.041
|
0.552
|
0.106
|
0.082
|
0.066
|
0.015
|
0.208
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000012
|
42.000
|
12.000
|
Hsc_gene_11942.t1;Hsc_gene_23371.t1;Hsc_gene_23375.t1;Hsc_gene_23408.t1;Hsc_gene_23420.t1;Hsc_gene_23468.t1;Hsc_gene_23924.t1;Hsc_gene_24786.t1;Hsc_gene_24792.t1;Hsc_gene_24801.t1;Hsc_gene_5341.t1;Hsc_gene_5395.t1
|
— | — | — |
KAI3411088.1 hypothetical protein GPALN_003173 [Globodera pallida]
|
XP_034010488
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;347-356
|
1.000
|
2-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
41489.800
|
8.818
|
10.500
|
26.966
|
14.326
|
46.348
|
53.652
|
15.449
|
11.517
|
44.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
cyan
|
44.774
|
3.294
|
11.673
|
27.595
|
76.382
|
83.439
|
21.879
|
83.164
|
1.382
|
79.566
|
46.059
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.589
|
2.930
|
1.357
|
1.440
|
— |
-1.923
|
— |
-1.783
|
-6.077
|
4.649
|
— | — | — |
No JSON data available for plots.