Hg_chrom7_TN10mRNA_13308
Organism: Heterodera glycines Gene Locus: chr7:800514-803992 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.63 | 0.981 | 1.132 | 1.177 | 0.636 | 0.566 | 0.502 | 0.703 | 2.365 | 1.221 | 0.974 | 1.536 | 2.287 | 0.927 | 1.065 | 1.119 | 0.593 | 0.608 | 2.78 | 0.886 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12547
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KKPRKKK,RRFDFYVDEHFKTRKW
|
— | — | — | — | — | — |
0.012
|
— | — |
0.324
|
0.251
|
0.040
|
0.284
|
0.346
|
0.200
|
0.083
|
0.007
|
0.343
|
0.294
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000012
|
42.000
|
12.000
|
Hsc_gene_11942.t1;Hsc_gene_23371.t1;Hsc_gene_23375.t1;Hsc_gene_23408.t1;Hsc_gene_23420.t1;Hsc_gene_23468.t1;Hsc_gene_23924.t1;Hsc_gene_24786.t1;Hsc_gene_24792.t1;Hsc_gene_24801.t1;Hsc_gene_5341.t1;Hsc_gene_5395.t1
|
— | — | — |
KAI3421010.1 hypothetical protein GPALN_014637 [Globodera pallida]
|
MXZ27165
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-498
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
57995.820
|
8.331
|
11.500
|
23.092
|
16.265
|
40.964
|
59.036
|
13.052
|
10.040
|
43.775
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
cyan
|
42.204
|
6.432
|
8.902
|
21.887
|
95.092
|
69.137
|
19.268
|
81.915
|
11.712
|
62.370
|
40.660
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.629
|
1.415
|
2.088
|
— |
-1.833
|
— |
-1.942
|
— | — | — | — | — |
No JSON data available for plots.