Hg_chrom7_TN10mRNA_13314
Organism: Heterodera glycines Gene Locus: chr7:819036-821377 Feature type: polypeptideProtein Sequence
Length: 359
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.393 | 1.749 | 1.165 | 0.576 | 1.253 | 1.214 | 1.028 | 1.393 | 1.114 | 1.393 | 0.211 | 1.966 | 1.006 | 0.429 | 1.08 | 0.557 | 0.913 | 1.013 | 0.643 | 0.164 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12553
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.760
|
0.438
|
0.010
|
0.602
|
0.069
|
0.049
|
0.100
|
0.030
|
0.070
|
0.394
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010956
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAI3419128.1 hypothetical protein GPALN_006889 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0003674_0.875|GO:0008150_0.784|GO:0005488_0.783|GO:0005515_0.745|GO:0005575_0.740|GO:0110165_0.725|GO:0009987_0.715|GO:0016020_0.644|GO:0008152_0.616|GO:0005622_0.608|GO:0043170_0.566|GO:0043226_0.548|GO:0043229_0.530|GO:0043227_0.516|GO:0043231_0.506
|
IPR002110+74-103_110-178_114-143_147-176_147-179_180-209_180-211_180-212_222-305_248-277_248-280_281-310+|IPR036770+21-359_38-335+
|
SM00248+74-103_114-143_147-176_180-209_248-277_281-310+
|
PF00023+180-211+Ankyrin_repeat|PF12796+110-178_222-305+Ankyrin_repeats_(3_copies)
|
— |
PTHR24126+38-214+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30;302-359
|
1.000
|
31-301
|
4hqd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
38827.550
|
4.343
|
-21.000
|
23.398
|
7.799
|
45.125
|
54.875
|
9.471
|
13.928
|
54.596
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
245.790
|
7.182
|
11.581
|
26.886
|
79.814
|
438.382
|
88.851
|
608.106
|
0.000
|
602.530
|
344.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.766
|
1.329
|
1.539
|
2.471
|
-2.292
|
— |
-2.629
|
-10.031
|
5.606
|
— | — | — |
No JSON data available for plots.