Hg_chrom7_TN10mRNA_13319
Organism: Heterodera glycines Gene Locus: chr7:830604-832258 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 0.84 | 1.313 | 0.287 | 0.972 | 0.499 | 0.463 | 0.278 | 1.605 | 1.314 | 1.347 | 1.471 | 2.469 | 0.908 | 1.247 | 1.071 | 0.82 | 0.884 | 1.496 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12558
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.858
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.726
|
0.195
|
0.061
|
0.476
|
0.101
|
0.054
|
0.078
|
0.018
|
0.123
|
0.361
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004502
|
2.000
|
1.000
|
Hsc_gene_23475.t1
|
Hsc_gene_23475.t1
|
— | — |
KAI3411061.1 hypothetical protein GPALN_003146 [Globodera pallida]
|
XP_007383021
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
41381.100
|
9.652
|
8.000
|
28.611
|
12.500
|
46.667
|
53.333
|
15.556
|
13.056
|
45.278
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
red
|
552.786
|
388.893
|
461.582
|
409.525
|
876.289
|
321.015
|
569.760
|
174.574
|
13.113
|
1207.989
|
695.899
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.066
|
-1.435
|
0.839
|
-0.978
|
1.847
|
-6.645
|
5.188
|
— | — | — |
No JSON data available for plots.