SCN Proteipedia

Hg_chrom7_TN10mRNA_13327

Organism: Heterodera glycines Gene Locus: chr7:867888-888090 Feature type: polypeptide

Protein Sequence

Length: 1,171

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.745	0.636	0.838	2.061	0.783	1.533	0.996	1.836	0.702	0.923	0.323	1.306	0.617	1.297	1.516	1.61	0.91	0.763	1.971	0.703	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12565	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.940

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	RPRR	64-85	0.966	53-75	0.998	—	—	0.000	—	—	0.141	0.110	0.038	0.260	0.203	0.221	0.268	0.011	0.303	0.702

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010959	1.000	1.000	Hsc_gene_17063.t2	Hsc_gene_17063.t1;Hsc_gene_17063.t3	—	Q19204.5 A disintegrin and metalloproteinase with thrombospondin motifs adt-2 [Caenorhabditis elegans]	KAI1707981.1 thrombospondin type 1 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004222\|GO:0006508\|GO:0008237	GO:0008150_0.924\|GO:0009987_0.778\|GO:0032501_0.665\|GO:0032502_0.658\|GO:0005575_0.645\|GO:0110165_0.642\|GO:0065007_0.624\|GO:0050789_0.581\|GO:0003674_0.566\|GO:0016043_0.521\|GO:0071840_0.521	IPR000884+638-697_641-697_826-877_829-877_831-876_884-944_887-944_888-943_958-1004_961-1006_963-1005_1005-1054_1008-1054_1009-1053_1061-1109_1064-1109_1065-1108_1112-1160_1115-1162_1117-1158+\|IPR001590+306-502_308-504+\|IPR024079+305-514+\|IPR036383+637-696_806-883_827-876_884-943_886-943_944-1006_959-1002_1007-1053_1007-1055_1058-1111_1062-1104_1112-1157_1112-1162+\|IPR041645+528-597+\|IPR050439+1007-1054+	SM00209+641-697_829-877_887-944_961-1006_1008-1054_1064-1109_1115-1162+	PF00090+831-876_888-943_963-1005_1009-1053_1065-1108_1117-1158+Thrombospondin_type_1_domain\|PF01421+308-504+Reprolysin_(M12B)_family_zinc_metalloprotease\|PF17771+528-597+ADAMTS_cysteine-rich_domain_2	—	PTHR13723+1007-1054+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-58	1.000	59-1171	6ool_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.885	129005.840	7.500	24.500	22.545	10.845	48.079	51.921	13.237	9.308	56.704

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	1133.756	122.096	57.123	4284.977	2527.666	1058.897	830.173	75.655	180.257	1466.271	915.122

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.326	4.997	6.337	-0.793	-1.243	-0.340	-3.925	3.602	—	—	—	—	—

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