Hg_chrom7_TN10mRNA_13329
Organism: Heterodera glycines Gene Locus: chr7:905911-910455 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 0.867 | 1.109 | 0.935 | 1.017 | 0.956 | 0.928 | 2.712 | 1.582 | 1.374 | 0.873 | 0.997 | 1.13 | 1.173 | 0.83 | 0.387 | 0.945 | 1.13 | 1.043 | 0.897 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12567
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.520
|
0.296
|
0.044
|
0.657
|
0.172
|
0.320
|
0.123
|
0.023
|
0.104
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010960
|
1.000
|
1.000
|
Hsc_gene_17048.t1
|
Hsc_gene_17048.t1
|
— |
Q18161.1 UPF0046 protein C25E10.12 [Caenorhabditis elegans]
|
KAI1722918.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
— |
IPR004843+48-240+|IPR024201+2-282+|IPR029052+2-279_47-259+|IPR051693+40-282+
|
— |
PF00149+48-240+Calcineurin-like_phosphoesterase
|
— |
PTHR12905+40-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
33280.300
|
6.596
|
1.000
|
27.458
|
13.898
|
43.390
|
56.610
|
15.254
|
12.203
|
47.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
1692.392
|
1283.806
|
629.256
|
583.142
|
2930.100
|
6014.040
|
1000.208
|
1268.947
|
47.330
|
2227.655
|
1293.230
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.257
|
-1.275
|
— |
2.297
|
1.052
|
-2.578
|
-2.353
|
— |
-5.682
|
— | — | — | — |
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