Hg_chrom7_TN10mRNA_13337
Organism: Heterodera glycines Gene Locus: chr7:930538-933595 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.563 | 0.625 | 1.466 | 0.0 | 1.882 | 1.241 | 0.448 | 0.0 | 0.597 | 1.453 | 2.851 | 1.581 | 1.045 | 0.414 | 1.646 | 0.538 | 0.793 | 0.815 | 0.414 | 0.316 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12575
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.757
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKVSKTEGQFAKLKTK,ERKKAEVRKRLEEAGRMKKAKKGFLTPERKKKLRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.302
|
0.053
|
0.019
|
0.749
|
0.357
|
0.039
|
0.265
|
0.004
|
0.218
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004503
|
2.000
|
1.000
|
Hsc_gene_23432.t1
|
Hsc_gene_23432.t1
|
— |
O44572.2 Troponin I 4 [Caenorhabditis elegans]
|
KAI3413715.1 Troponin I 4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005861
|
GO:0005575_0.910|GO:0110165_0.909|GO:0005622_0.902|GO:0043226_0.862|GO:0043229_0.858|GO:0005737_0.823|GO:0008150_0.794|GO:0043228_0.756|GO:0043232_0.756|GO:0003674_0.569|GO:0005488_0.569|GO:0099080_0.543|GO:0005515_0.518|GO:0099081_0.515|GO:0099512_0.515
|
IPR001978+35-165+|IPR038077+20-183_29-173+|IPR050875+11-177+
|
— |
PF00992+35-165+Troponin
|
— |
PTHR13738+11-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30
|
1.000
|
31-186
|
8fmt_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
21974.480
|
10.486
|
14.000
|
46.237
|
5.376
|
62.366
|
37.634
|
26.882
|
19.355
|
35.484
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
3438.108
|
305.389
|
626.024
|
1108.416
|
624.254
|
277.315
|
102.171
|
809.897
|
638.068
|
13118.123
|
7769.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
1.723
|
0.933
|
-0.860
|
-1.156
|
-1.430
|
1.441
|
-2.843
|
-4.458
|
— |
-3.872
|
-4.039
|
— |
No JSON data available for plots.