Hg_chrom7_TN10mRNA_13339
Organism: Heterodera glycines Gene Locus: chr7:944853-947943 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.285 | 0.935 | 1.096 | 1.213 | 0.754 | 0.515 | 0.778 | 1.256 | 1.228 | 1.698 | 0.457 | 1.774 | 2.094 | 0.483 | 1.026 | 0.933 | 0.989 | 0.761 | 1.546 | 0.296 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12577
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.425
|
0.260
|
0.008
|
0.694
|
0.107
|
0.037
|
0.158
|
0.037
|
0.086
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010961
|
2.000
|
0.000
|
0.000
|
— | — | — |
XP_063569351.1 ankyrin repeat and SOCS box protein 3 isoform X5 [Pongo abelii]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.856|GO:0110165_0.848|GO:0016020_0.769|GO:0008150_0.721|GO:0003674_0.650|GO:0005622_0.647|GO:0009987_0.646|GO:0071944_0.567|GO:0050896_0.560|GO:0005886_0.545|GO:0065007_0.543|GO:0050789_0.532|GO:0051716_0.525|GO:0050794_0.519|GO:0032501_0.510
|
IPR002110+10-48_70-147_85-114_85-117+|IPR036770+18-164_29-144+|IPR050745+71-154+
|
SM00248+10-48_85-114+
|
PF12796+70-147+Ankyrin_repeats_(3_copies)
|
— |
PTHR24189+71-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-199
|
4gpm_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
21992.410
|
5.575
|
-2.500
|
21.106
|
13.065
|
39.698
|
60.302
|
10.553
|
10.553
|
51.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
11.546
|
14.770
|
22.418
|
18.127
|
23.054
|
15.711
|
23.147
|
17.478
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — |
5.037
|
— | — | — |
No JSON data available for plots.