Hg_chrom7_TN10mRNA_13341
Organism: Heterodera glycines Gene Locus: chr7:954461-955466 Feature type: polypeptideProtein Sequence
Length: 286
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.488 | 1.382 | 0.636 | 1.085 | 0.758 | 0.807 | 0.458 | 1.399 | 1.166 | 1.229 | 1.907 | 1.234 | 1.651 | 1.009 | 0.999 | 1.249 | 0.745 | 0.795 | 2.69 | 0.514 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12579
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
IKKS,KRKNIYLESYKKEFRHIKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.746
|
0.142
|
0.016
|
0.276
|
0.149
|
0.030
|
0.069
|
0.010
|
0.046
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000511
|
7.000
|
0.000
|
0.000
|
Hsc_gene_16124.t1;Hsc_gene_2244.t1;Hsc_gene_2856.t1
|
— | — |
KAF0702544.1 protein FAM200B-like [Aphis craccivora]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
— |
IPR008906+189-257+|IPR012337+197-260+
|
— |
PF05699+189-257+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR37162+30-104+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-286
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
33288.900
|
10.563
|
31.000
|
28.322
|
13.986
|
50.699
|
49.301
|
20.280
|
8.042
|
44.406
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
8.128
|
17.499
|
13.165
|
14.323
|
12.018
|
9.015
|
1.526
|
10.207
|
5.529
|
2.257
|
3.659
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.644
|
— | — | — | — |
-2.547
|
— |
-2.598
|
— | — | — | — | — |
No JSON data available for plots.