Hg_chrom7_TN10mRNA_13344
Organism: Heterodera glycines Gene Locus: chr7:962211-967116 Feature type: polypeptideProtein Sequence
Length: 574
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 1.256 | 0.665 | 1.081 | 0.784 | 0.849 | 0.643 | 1.22 | 0.929 | 1.248 | 0.818 | 1.537 | 1.839 | 0.838 | 1.209 | 1.394 | 0.885 | 0.924 | 1.206 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12582
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.427
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
2-22
|
1.000
|
73-96
|
0.999
|
— | — |
0.000
|
— | — |
0.174
|
0.278
|
0.132
|
0.599
|
0.244
|
0.109
|
0.303
|
0.137
|
0.364
|
0.402
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q4TT88.1 Puromycin-sensitive aminopeptidase [Caenorhabditis elegans]
|
AAX68678.1 aminopeptidase [Heterodera glycines]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008237|GO:0008270
|
GO:0005575_0.842|GO:0110165_0.835|GO:0008150_0.790|GO:0003674_0.784|GO:0016020_0.684|GO:0003824_0.643|GO:0005622_0.621|GO:0043226_0.608|GO:0016787_0.604|GO:0140096_0.589|GO:0008233_0.585|GO:0071944_0.543|GO:0043229_0.541|GO:0005737_0.528|GO:0008238_0.520|GO:0004177_0.517|GO:0005886_0.507
|
IPR014782+280-345+|IPR024571+299-549+|IPR027268+278-358+|IPR050344+280-351+
|
— |
PF01433+280-345+Peptidase_family_M1_domain|PF11838+299-549+ERAP1-like_C-terminal_domain
|
— |
PTHR11533+280-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-574
|
8sw1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.903
|
64275.780
|
9.080
|
24.000
|
22.125
|
13.066
|
45.993
|
54.007
|
13.763
|
8.362
|
51.568
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
greenyellow
|
1655.326
|
863.338
|
899.607
|
1950.004
|
2146.835
|
1424.750
|
1254.709
|
942.138
|
734.497
|
3135.660
|
2106.590
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.171
|
1.039
|
1.225
|
0.107
|
-0.576
|
— |
-0.704
|
0.557
|
— | — | — | — | — |
No JSON data available for plots.