Hg_chrom7_TN10mRNA_13345
Organism: Heterodera glycines Gene Locus: chr7:967028-967778 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 1.163 | 1.091 | 0.345 | 1.667 | 0.769 | 0.833 | 0.75 | 1.222 | 1.081 | 1.288 | 1.471 | 1.806 | 0.769 | 1.633 | 0.714 | 0.656 | 0.53 | 1.538 | 0.882 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12583
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.865
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRSSNPPFIIKEDYRKKIN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.545
|
0.200
|
0.105
|
0.535
|
0.053
|
0.046
|
0.083
|
0.001
|
0.155
|
0.385
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003922
|
3.000
|
0.000
|
0.000
|
— | — | — |
XP_013786133.2 adenosine monophosphate-protein transferase FICD homolog [Limulus polyphemus]
|
HCN78880
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.923|GO:0003674_0.846|GO:0005575_0.782|GO:0110165_0.782|GO:0003824_0.737|GO:0016020_0.697|GO:0016740_0.690|GO:0016772_0.662|GO:0016779_0.657|GO:0070566_0.650|GO:0070733_0.650|GO:0050896_0.646|GO:0008152_0.633|GO:0044238_0.614|GO:0006950_0.603|GO:0005622_0.597|GO:0043170_0.589|GO:0009987_0.564|GO:0071944_0.563|GO:0019538_0.558|GO:0005886_0.554|GO:0005737_0.549|GO:0043226_0.548|GO:0043229_0.540|GO:0043412_0.524|GO:0016787_0.522|GO:0036211_0.521|GO:0043227_0.518|GO:0018117_0.501|GO:0018175_0.501
|
IPR003812+54-193_55-157+|IPR036597+9-200_41-196+|IPR040198+49-194+
|
— |
PF02661+55-157+Fic/DOC_family
|
— |
PTHR13504+49-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29
|
1.000
|
30-200
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
23337.500
|
7.864
|
2.500
|
34.000
|
13.000
|
51.000
|
49.000
|
18.000
|
16.000
|
41.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
3.908
|
3.298
|
2.364
|
2.823
|
2.805
|
14.032
|
1.425
|
18.847
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.338
|
-3.281
|
— |
-3.574
|
— | — | — | — | — |
No JSON data available for plots.