Hg_chrom7_TN10mRNA_13350
Organism: Heterodera glycines Gene Locus: chr7:999739-1001104 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.21 | 0.605 | 1.284 | 0.256 | 1.115 | 0.572 | 2.124 | 2.23 | 0.578 | 0.402 | 0.451 | 1.312 | 0.929 | 0.858 | 1.897 | 0.903 | 0.792 | 0.507 | 1.43 | 1.093 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12588
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.249
|
0.216
|
0.027
|
0.578
|
0.136
|
0.099
|
0.128
|
0.026
|
0.556
|
0.288
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010962
|
1.000
|
1.000
|
Hsc_gene_10493.t1
|
— | — | — |
KAH7694885.1 Protein PAT-12 b [Aphelenchus avenae]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0005575_0.839|GO:0110165_0.839|GO:0009987_0.837|GO:0032502_0.748|GO:0048856_0.748|GO:0032501_0.740|GO:0007275_0.736|GO:0071840_0.707|GO:0016043_0.702|GO:0009653_0.689|GO:0044085_0.685|GO:0009790_0.684|GO:0022607_0.680|GO:0034330_0.677|GO:0034329_0.675|GO:0048598_0.674|GO:0007044_0.670|GO:0031581_0.670|GO:0150115_0.670|GO:0030054_0.581|GO:0070161_0.555|GO:0030055_0.540|GO:0030056_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;51-269
|
1.000
|
2-50
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.861
|
28831.290
|
6.779
|
2.000
|
30.483
|
13.383
|
46.468
|
53.532
|
16.729
|
13.755
|
57.621
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
2.083
|
1.223
|
1.147
|
1.183
|
0.493
|
2.158
|
2.026
|
5.800
|
5.139
|
0.000
|
2.203
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.