Hg_chrom7_TN10mRNA_13351
Organism: Heterodera glycines Gene Locus: chr7:1004773-1005443 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.517 | 1.034 | 1.313 | 0.383 | 1.204 | 1.14 | 0.926 | 0.833 | 1.358 | 1.201 | 1.263 | 1.307 | 2.006 | 0.748 | 1.587 | 0.635 | 0.638 | 0.589 | 1.709 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12589
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNSQPPFIIKEDWRKKIN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.628
|
0.378
|
0.238
|
0.468
|
0.108
|
0.048
|
0.077
|
0.002
|
0.221
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003922
|
3.000
|
0.000
|
0.000
|
— | — | — |
MCX6749134.1 Fic family protein [Candidatus Pacearchaeota archaeon]
|
WP_336263800
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.926|GO:0003674_0.846|GO:0005575_0.781|GO:0110165_0.781|GO:0003824_0.740|GO:0016020_0.698|GO:0016740_0.694|GO:0016772_0.663|GO:0016779_0.657|GO:0070566_0.650|GO:0070733_0.650|GO:0050896_0.649|GO:0008152_0.636|GO:0044238_0.617|GO:0006950_0.601|GO:0005622_0.595|GO:0043170_0.594|GO:0071944_0.571|GO:0019538_0.570|GO:0009987_0.569|GO:0005886_0.564|GO:0005737_0.549|GO:0043226_0.545|GO:0043412_0.533|GO:0043229_0.530|GO:0036211_0.528|GO:0016787_0.527|GO:0018117_0.507|GO:0018175_0.507|GO:0043227_0.505
|
IPR003812+34-173_35-137+|IPR036597+9-175_28-175+|IPR040198+25-170+
|
— |
PF02661+35-137+Fic/DOC_family
|
— |
PTHR13504+25-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
21057.050
|
8.961
|
4.500
|
32.222
|
13.889
|
49.444
|
50.556
|
17.778
|
14.444
|
41.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
39.424
|
18.727
|
12.500
|
9.210
|
11.880
|
20.322
|
5.471
|
23.665
|
0.514
|
133.928
|
76.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.815
|
-1.162
|
— | — |
0.792
|
-1.889
|
— |
-1.973
|
-7.377
|
— | — | — | — |
No JSON data available for plots.