Hg_chrom7_TN10mRNA_13357
Organism: Heterodera glycines Gene Locus: chr7:1033087-1033909 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.067 | 1.168 | 0.316 | 1.376 | 0.706 | 0.437 | 0.917 | 1.631 | 1.612 | 1.946 | 1.079 | 1.529 | 1.059 | 0.562 | 0.786 | 0.752 | 0.556 | 0.706 | 0.54 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12595
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.649
|
0.450
|
0.076
|
0.599
|
0.183
|
0.055
|
0.104
|
0.040
|
0.075
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002387
|
2.000
|
2.000
|
Hsc_gene_3961.t1;Hsc_gene_7815.t1
|
— | — |
Q17A75.1 Protein adenylyltransferase Fic [Aedes aegypti]
|
MDQ2925156.1 Fic family protein [Acidobacteriota bacterium]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.941|GO:0110165_0.937|GO:0008150_0.911|GO:0016020_0.851|GO:0050896_0.786|GO:0003674_0.785|GO:0006950_0.731|GO:0005622_0.699|GO:0071944_0.692|GO:0005886_0.683|GO:0003824_0.665|GO:0016740_0.656|GO:0043226_0.656|GO:0016772_0.650|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0005737_0.643|GO:0043229_0.643|GO:0009987_0.635|GO:0043227_0.609|GO:0043231_0.592|GO:0005488_0.566|GO:0005515_0.552|GO:0051716_0.541|GO:0008152_0.513|GO:0043170_0.513|GO:0044238_0.506
|
IPR003812+1-98_21-51+|IPR036597+1-103_20-84+
|
— |
PF02661+21-51+Fic/DOC_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-109
|
5jj7_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
12419.430
|
8.023
|
2.000
|
32.110
|
10.092
|
49.541
|
50.459
|
17.431
|
14.679
|
42.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.