Hg_chrom7_TN10mRNA_13364
Organism: Heterodera glycines Gene Locus: chr7:1058264-1060049 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.802 | 0.418 | 0.595 | 1.054 | 1.179 | 0.889 | 1.437 | 1.277 | 1.087 | 0.435 | 2.028 | 1.277 | 1.216 | 2.58 | 0.493 | 1.036 | 0.871 | 0.442 | 1.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12601
|
— | — |
0.889
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
35-82
|
0.960
|
— | — |
0.000
|
— | — |
0.533
|
0.383
|
0.150
|
0.596
|
0.042
|
0.024
|
0.034
|
0.051
|
0.035
|
0.419
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000909
|
1.000
|
5.000
|
Hsc_gene_3943.t1;Hsc_gene_3943.t2;Hsc_gene_3943.t3;Hsc_gene_3954.t1;Hsc_gene_7823.t1
|
— | — |
Q9BVA6.2 Protein adenylyltransferase FICD [Homo sapiens]
|
XP_065570264.1 protein adenylyltransferase FICD-like [Artemia franciscana]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0003674_0.875|GO:0005575_0.855|GO:0110165_0.854|GO:0003824_0.757|GO:0050896_0.757|GO:0016020_0.749|GO:0006950_0.704|GO:0016740_0.685|GO:0016772_0.655|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0071944_0.645|GO:0009987_0.636|GO:0005886_0.632|GO:0008152_0.603|GO:0005622_0.591|GO:0044238_0.572|GO:0005488_0.571|GO:0005737_0.545|GO:0043226_0.535|GO:0043170_0.532|GO:0043229_0.525|GO:0051716_0.521|GO:0005515_0.513|GO:0019538_0.511|GO:0043227_0.505
|
IPR003812+43-174_47-141+|IPR036597+4-165_63-150+|IPR040198+41-149+
|
— |
PF02661+47-141+Fic/DOC_family
|
— |
PTHR13504+41-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-174
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
20049.200
|
10.679
|
14.500
|
27.011
|
12.069
|
44.828
|
55.172
|
18.391
|
8.621
|
44.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
23.204
|
1.309
|
4.604
|
3.126
|
6.077
|
7.371
|
7.905
|
11.405
|
3.278
|
83.386
|
49.054
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.587
|
— | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.