Hg_chrom7_TN10mRNA_13365
Organism: Heterodera glycines Gene Locus: chr7:1100284-1103723 Feature type: polypeptideProtein Sequence
Length: 507
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 1.376 | 1.183 | 1.428 | 0.756 | 1.669 | 0.54 | 1.874 | 0.745 | 0.933 | 0.598 | 1.276 | 1.151 | 0.91 | 1.369 | 1.071 | 1.132 | 0.986 | 1.821 | 0.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12602
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
17-44
|
0.999
|
— | — |
0.001
|
— | — |
0.328
|
0.355
|
0.028
|
0.396
|
0.186
|
0.048
|
0.129
|
0.030
|
0.297
|
0.300
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002246
|
3.000
|
1.000
|
Hsc_gene_17407.t1
|
— | — | — |
KAK5974455.1 MutL C terminal dimerization domain-containing protein, partial [Trichostrongylus colubriformis]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0009987_0.904|GO:0005575_0.897|GO:0110165_0.887|GO:0050896_0.849|GO:0051716_0.819|GO:0005622_0.790|GO:0016043_0.770|GO:0071840_0.770|GO:0006950_0.734|GO:0006996_0.706|GO:0065007_0.699|GO:0033554_0.695|GO:0000280_0.683|GO:0007049_0.683|GO:0022402_0.683|GO:0048285_0.683|GO:0050789_0.683|GO:0006974_0.678|GO:0050794_0.665|GO:0032501_0.624|GO:0016020_0.600|GO:0048518_0.586|GO:0048522_0.579|GO:0008152_0.572|GO:0044238_0.557|GO:0043170_0.556|GO:0043226_0.528|GO:0051239_0.528|GO:0043229_0.517|GO:0043227_0.508|GO:0006139_0.501
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
95-293
|
2.000
|
1-94;294-507
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
57340.400
|
7.183
|
7.500
|
25.444
|
11.637
|
52.268
|
47.732
|
14.398
|
11.045
|
54.241
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
red
|
13.248
|
2.833
|
3.577
|
6.894
|
8.313
|
4.000
|
13.787
|
1.887
|
1.382
|
41.440
|
24.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.147
|
— | — | — |
1.793
|
— |
3.000
|
— | — | — | — | — |
No JSON data available for plots.