Hg_chrom7_TN10mRNA_13373
Organism: Heterodera glycines Gene Locus: chr7:1149115-1150998 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.116 | 0.582 | 0.552 | 1.0 | 0.923 | 0.333 | 1.8 | 1.244 | 1.243 | 1.394 | 1.176 | 1.0 | 0.769 | 1.878 | 1.086 | 0.984 | 0.667 | 0.923 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12610
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRRP,KKTRRKLKRHQLNRREKE
|
41-73
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.062
|
0.034
|
0.009
|
0.160
|
0.267
|
0.190
|
0.403
|
0.001
|
0.825
|
0.267
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17410.t1
|
— |
Q09274.3 Degenerin-like protein unc-105 [Caenorhabditis elegans]
|
KAI1711914.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005272|GO:0006814|GO:0016020
|
GO:0008150_0.940|GO:0005575_0.885|GO:0110165_0.882|GO:0009987_0.835|GO:0016020_0.778|GO:0003674_0.694|GO:0051179_0.653|GO:0006810_0.651|GO:0051234_0.651|GO:0071944_0.591|GO:0005886_0.590|GO:0055085_0.582|GO:0006811_0.579|GO:0034220_0.576|GO:0006812_0.571|GO:0030001_0.571|GO:0050896_0.539
|
IPR001873+58-202_74-227_93-110_132-148+
|
— |
PF00858+74-227+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+58-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;173-250
|
1.000
|
6-172
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
28699.190
|
10.866
|
27.500
|
31.200
|
10.800
|
53.200
|
46.800
|
22.000
|
9.200
|
44.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
2.456
|
0.615
|
8.181
|
1.739
|
1.512
|
1.988
|
10.756
|
3.857
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.516
|
— |
-2.125
|
— | — |
2.442
|
— |
1.619
|
— | — | — | — | — |
No JSON data available for plots.