SCN Proteipedia

Hg_chrom7_TN10mRNA_13377

Organism: Heterodera glycines Gene Locus: chr7:1191666-1215228 Feature type: polypeptide

Protein Sequence

Length: 1,989

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.035	0.959	0.74	0.867	1.098	1.56	0.826	1.257	0.726	1.223	0.762	1.39	0.88	1.054	1.734	1.25	0.865	0.716	0.657	0.532	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12614	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.795

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRRK,RKRK,RRRR,RREKPFLKLQKRHAK,KRHAKEWEEIKRRHQK,KLQKRHAKEWEEIKRR,RKISSFYRCGEAERLKAR	—	—	—	—	—	—	0.000	—	—	0.241	0.281	0.032	0.653	0.153	0.354	0.203	0.021	0.560	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002389	2.000	2.000	Hsc_gene_7741.t1;Hsc_gene_7741.t2	Hsc_gene_7741.t1;Hsc_gene_7741.t2	—	G5EBH0.1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8 [Caenorhabditis elegans]	KAI3413707.1 PLC-beta C terminal [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004435\|GO:0006629\|GO:0007165\|GO:0008081\|GO:0035556	GO:0008150_0.926\|GO:0005575_0.859\|GO:0110165_0.859\|GO:0009987_0.843\|GO:0065007_0.802\|GO:0050789_0.761\|GO:0003674_0.724\|GO:0005622_0.715\|GO:0050794_0.683\|GO:0050896_0.613\|GO:0005488_0.597\|GO:0016020_0.584\|GO:0005515_0.566\|GO:0051716_0.555\|GO:0007154_0.548\|GO:0023052_0.541\|GO:0032501_0.520	IPR000008+1273-1398_1291-1390_1292-1384+\|IPR000909+393-544_395-545+\|IPR001192+15-1411_398-416_424-444_528-545+\|IPR001711+1154-1268_1154-1270+\|IPR011992+278-391+\|IPR015359+293-381+\|IPR017946+391-600_396-1283_1110-1281+\|IPR035892+1283-1442_1293-1409+\|IPR037862+15-139_19-148+\|IPR042531+1698-1984+\|IPR053945+152-199+	SM00148+393-544+\|SM00149+1154-1270+\|SM00239+1291-1390+	PF00168+1292-1384+C2_domain\|PF00387+1154-1268+Phosphatidylinositol-specific_phospholipase_C,_Y_domain\|PF00388+395-545+Phosphatidylinositol-specific_phospholipase_C,_X_domain\|PF09279+293-381+Phosphoinositide-specific_phospholipase_C,_efhand-like\|PF17787+15-139+PH_domain\|PF22631+152-199+Phosphoinositide_phospholipase_C_beta1-4-like_EF-hand_domain	G3DSA:1.10.238.10:FF:000005+296-385+Phosphoinositide_phospholipase_C\|G3DSA:2.60.40.150:FF:000008+1283-1426+1-phosphatidylinositol_4,5-bisphosphate_phosphodiesterase	PTHR10336+15-1411+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	529-701;739-1137;1465-1555;1726-1829;1879-1989	5.000	1-528;702-738;1138-1464;1556-1725;1830-1878	8emx_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.906	220669.870	9.453	82.000	26.697	8.346	50.930	49.070	16.038	10.659	50.779

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkgrey	5795.407	5702.229	4876.933	2397.803	1184.332	1837.149	2093.561	5240.872	2679.823	14595.209	9488.615

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.454	-1.387	-0.916	-1.050	0.648	0.199	1.410	-1.182	-2.557	—	-3.135	—	—

No JSON data available for plots.

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