Hg_chrom7_TN10mRNA_13385
Organism: Heterodera glycines Gene Locus: chr7:1257937-1264063 Feature type: polypeptideProtein Sequence
Length: 487
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.597 | 1.576 | 1.045 | 1.062 | 0.787 | 0.895 | 0.953 | 0.924 | 1.415 | 1.249 | 1.058 | 0.846 | 2.453 | 0.829 | 0.712 | 0.939 | 0.909 | 0.684 | 0.948 | 0.785 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12622
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.869
|
0.918
|
0.000
|
0.000
|
0.161
|
0.289
|
0.033
|
0.267
|
0.217
|
0.086
|
0.189
|
0.018
|
0.167
|
0.867
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010966
|
1.000
|
1.000
|
Hsc_gene_23923.t1
|
— | — |
Q8VIF2.1 Serine protease 42 [Mus musculus]
|
XP_001866674.1 CLIP domain-containing serine protease 14D [Culex quinquefasciatus];XP_039433503.1 CLIP domain-containing serine protease B4-like [Culex pipiens pallens];EDS43738.1 anionic trypsin-2 [Culex quinquefasciatus]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.760|GO:0110165_0.760|GO:0008150_0.732|GO:0003674_0.683|GO:0003824_0.576|GO:0016787_0.517|GO:0140096_0.501
|
IPR001254+240-477_241-458_241-482+|IPR009003+218-472+|IPR033116+430-441+|IPR043504+233-480+|IPR051333+173-472+
|
SM00020+240-477+
|
PF00089+241-458+Trypsin
|
— |
PTHR24260+173-472+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-487
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
54772.580
|
7.290
|
4.500
|
22.793
|
14.579
|
45.175
|
54.825
|
12.320
|
10.472
|
49.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
331.908
|
1.047
|
13.226
|
7.289
|
6.803
|
155.978
|
29.736
|
190.001
|
8.982
|
1293.829
|
743.180
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.410
|
2.650
|
— | — |
4.537
|
-2.381
|
— |
-2.532
|
-4.809
|
— |
-4.943
|
— | — |