Hg_chrom7_TN10mRNA_13387
Organism: Heterodera glycines Gene Locus: chr7:1273476-1276280 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 1.42 | 1.527 | 0.526 | 1.272 | 1.077 | 0.727 | 1.145 | 0.933 | 0.825 | 1.388 | 1.796 | 0.53 | 0.514 | 0.701 | 1.091 | 1.314 | 0.694 | 2.936 | 0.786 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12624
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.854
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.462
|
0.348
|
0.019
|
0.569
|
0.155
|
0.129
|
0.169
|
0.005
|
0.120
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000888
|
3.000
|
3.000
|
Hsc_gene_12253.t1;Hsc_gene_12253.t2;Hsc_gene_15251.t1
|
Hsc_gene_12253.t1;Hsc_gene_15161.t1;Hsc_gene_15249.t1;Hsc_gene_15249.t2;Hsc_gene_15251.t1;Hsc_gene_15251.t2
|
— |
O61955.2 Eukaryotic translation initiation factor 4E-3 [Caenorhabditis elegans]
|
KAI3413709.1 Eukaryotic translation initiation factor 4E-3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003743|GO:0005737|GO:0006413
|
GO:0008150_0.890|GO:0005575_0.717|GO:0110165_0.670|GO:0003674_0.645|GO:0005622_0.642|GO:0005488_0.581|GO:0009987_0.578|GO:0005737_0.561|GO:0043226_0.532|GO:0065007_0.520|GO:0008152_0.513|GO:0043229_0.511|GO:0044238_0.506
|
IPR001040+26-237_66-224+|IPR019770+117-140+|IPR023398+51-237_59-244+
|
— |
PF01652+66-224+Eukaryotic_initiation_factor_4E
|
— |
PTHR11960+26-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-57;230-262
|
1.000
|
58-229
|
3m94_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
29785.080
|
5.089
|
-6.000
|
30.916
|
10.687
|
56.870
|
43.130
|
14.885
|
16.031
|
51.527
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1736.903
|
1144.619
|
1149.072
|
1139.403
|
1851.160
|
2730.665
|
2195.788
|
2394.347
|
947.391
|
2161.510
|
1641.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.224
|
-0.144
|
— |
0.669
|
0.575
|
-0.303
|
— | — | — | — | — | — | — |
No JSON data available for plots.