Hg_chrom7_TN10mRNA_13397
Organism: Heterodera glycines Gene Locus: chr7:1332917-1340100 Feature type: polypeptideProtein Sequence
Length: 622
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 0.897 | 0.906 | 0.665 | 0.857 | 1.154 | 0.976 | 0.965 | 0.929 | 1.086 | 0.804 | 0.946 | 0.982 | 1.391 | 1.444 | 1.447 | 0.87 | 0.974 | 0.495 | 0.662 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12634
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.611
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
GGRPKRRRGRHRRR,RRLNGLKKTVTIYVARRRP,RRNGVGPRFVSAVQKARSK,RRMAHPRSGLDIRDRKWLK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.342
|
0.211
|
0.006
|
0.646
|
0.185
|
0.043
|
0.048
|
0.013
|
0.462
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010972
|
1.000
|
1.000
|
Hsc_gene_16387.t1
|
— | — |
Q22227.1 Segment polarity protein dishevelled homolog mig-5 [Caenorhabditis elegans]
|
KAI1728625.1 DIX domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016055
|
GO:0005575_0.930|GO:0110165_0.927|GO:0008150_0.881|GO:0009987_0.806|GO:0016020_0.803|GO:0005622_0.779|GO:0003674_0.732|GO:0043226_0.680|GO:0065007_0.661|GO:0071944_0.657|GO:0005488_0.644|GO:0050789_0.628|GO:0005886_0.625|GO:0005737_0.609|GO:0005515_0.597|GO:0051179_0.593|GO:0043229_0.581|GO:0050794_0.535|GO:0071840_0.523|GO:0043227_0.522|GO:0051641_0.522|GO:0016043_0.519
|
IPR001158+15-97_15-99_17-82+|IPR001478+288-370_290-357_294-367_298-373+|IPR015506+17-588+|IPR029071+16-81+|IPR036034+263-374_274-376+|IPR036388+542-605+|IPR038207+14-96+
|
SM00021+15-99+|SM00228+298-373+
|
PF00595+294-367+PDZ_domain|PF00778+17-82+DIX_domain
|
— |
PTHR10878+17-588+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
161-297;416-544
|
3.000
|
1-160;298-415;545-622
|
8wma_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
67687.580
|
9.270
|
20.000
|
24.437
|
8.360
|
48.232
|
51.768
|
14.309
|
10.129
|
55.788
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
703.433
|
567.452
|
461.534
|
370.667
|
358.858
|
360.943
|
713.610
|
269.042
|
223.935
|
1746.281
|
1093.847
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.527
|
-0.751
|
-0.208
|
— | — |
0.993
|
-0.530
|
1.549
|
— | — | — | — | — |
No JSON data available for plots.