Hg_chrom7_TN10mRNA_13399
Organism: Heterodera glycines Gene Locus: chr7:1367957-1369094 Feature type: polypeptideProtein Sequence
Length: 75
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.62 | 0.242 | 2.759 | 1.111 | 0.342 | 0.476 | 1.333 | 0.593 | 1.441 | 1.616 | 1.569 | 1.111 | 0.769 | 0.272 | 1.714 | 1.311 | 1.01 | 1.026 | 0.392 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12636
|
— | — |
0.444
|
— |
1.000
|
1.000
|
1.000
|
— |
1.000
|
— | — | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.999
|
1.000
|
0.000
|
0.000
|
0.347
|
0.503
|
0.082
|
0.249
|
0.178
|
0.177
|
0.080
|
0.025
|
0.240
|
0.724
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010973
|
1.000
|
1.000
|
Hsc_gene_26428.t1
|
— | — | — | — |
KAJ7954559
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-75
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
8169.590
|
8.247
|
4.000
|
22.667
|
9.333
|
46.667
|
53.333
|
14.667
|
8.000
|
54.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
788.875
|
2.968
|
840.625
|
264.986
|
39.076
|
1.248
|
2.446
|
15.508
|
4007.298
|
8.281
|
1722.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.910
|
6.336
|
-1.558
|
-2.795
|
-4.949
|
— |
3.569
|
— |
8.763
|
— | — | — | — |