Hg_chrom7_TN10mRNA_13400
Organism: Heterodera glycines Gene Locus: chr7:1377743-1379803 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.589 | 1.104 | 1.093 | 0.546 | 1.53 | 1.704 | 0.866 | 1.108 | 1.828 | 1.24 | 1.151 | 0.558 | 2.022 | 0.609 | 0.84 | 0.949 | 0.674 | 0.384 | 0.73 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12637
|
— | — |
2.556
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.402
|
0.125
|
0.016
|
0.652
|
0.397
|
0.231
|
0.141
|
0.076
|
0.167
|
0.384
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
MDB3949850
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.948|GO:0005575_0.923|GO:0110165_0.923|GO:0009987_0.900|GO:0005622_0.878|GO:0016020_0.849|GO:0043226_0.838|GO:0043229_0.829|GO:0005737_0.816|GO:0065007_0.811|GO:0050789_0.797|GO:0043227_0.791|GO:0008152_0.780|GO:0051179_0.780|GO:0050794_0.773|GO:0071840_0.773|GO:0044238_0.771|GO:0043231_0.770|GO:0051234_0.769|GO:0006810_0.766|GO:0016043_0.765|GO:0043170_0.753|GO:0032501_0.752|GO:0032502_0.746|GO:0048856_0.744|GO:0019538_0.728|GO:0051641_0.725|GO:0048518_0.723|GO:0019222_0.721|GO:0048519_0.720|GO:0048522_0.719|GO:0006996_0.718|GO:0051649_0.713|GO:0060255_0.713|GO:0048869_0.712|GO:0030154_0.711|GO:0048468_0.711|GO:0048523_0.711|GO:0080090_0.706|GO:0009056_0.705|GO:0044085_0.705|GO:0022414_0.702|GO:0033036_0.702|GO:0008104_0.701|GO:0046907_0.701|GO:0070727_0.701|GO:0032879_0.699|GO:0071705_0.698|GO:0009893_0.697|GO:0022607_0.694|GO:0010604_0.692|GO:0051049_0.692|GO:0009057_0.691|GO:0019953_0.691|GO:0045184_0.691|GO:0007010_0.689|GO:0009653_0.689|GO:0003006_0.688|GO:0015031_0.688|GO:0042592_0.686|GO:0009888_0.685|GO:0051246_0.685|GO:0060341_0.685|GO:0009894_0.684|GO:0006886_0.683|GO:0006508_0.682|GO:0030163_0.682|GO:0032880_0.682|GO:0007276_0.680|GO:0048609_0.680|GO:0007155_0.679|GO:0048646_0.679|GO:0022412_0.677|GO:0060429_0.677|GO:0007281_0.676|GO:0007610_0.676|GO:0042176_0.676|GO:0045229_0.676|GO:0051603_0.676|GO:1903829_0.676|GO:0009896_0.675|GO:0010498_0.675|GO:0030155_0.675|GO:0030855_0.675|GO:0032386_0.675|GO:0048871_0.675|GO:0051247_0.675|GO:0070201_0.675|GO:0098609_0.675|GO:0006511_0.674|GO:0007292_0.674|GO:0019941_0.674|GO:0043632_0.674|GO:0051050_0.674|GO:0002064_0.673|GO:0048477_0.673|GO:0006611_0.670|GO:0006913_0.670|GO:0007162_0.670|GO:0007299_0.670|GO:0007306_0.670|GO:0007631_0.670|GO:0010927_0.670|GO:0030162_0.670|GO:0030536_0.670|GO:0030537_0.670|GO:0030707_0.670|GO:0032388_0.670|GO:0032434_0.670|GO:0032436_0.670|GO:0032989_0.670|GO:0032991_0.670|GO:0033157_0.670|GO:0043161_0.670|GO:0045732_0.670|GO:0045862_0.670|GO:0046822_0.670|GO:0046824_0.670|GO:0046825_0.670|GO:0046827_0.670|GO:0046843_0.670|GO:0051168_0.670|GO:0051169_0.670|GO:0051222_0.670|GO:0051223_0.670|GO:0060249_0.670|GO:0060250_0.670|GO:0061136_0.670|GO:0090136_0.670|GO:0090316_0.670|GO:1901800_0.670|GO:1903050_0.670|GO:1903052_0.670|GO:1904951_0.670|GO:2000058_0.670|GO:2000060_0.670|GO:0005634_0.638|GO:1902494_0.579|GO:0140535_0.558|GO:1990234_0.556|GO:0000151_0.540|GO:0034657_0.540
|
IPR001870+101-290+|IPR003877+199-287+|IPR013320+188-288+|IPR043136+105-294+|IPR044736+186-286+
|
— |
PF00622+199-287+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-103
|
1.000
|
104-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
36156.790
|
5.047
|
-7.500
|
29.114
|
12.975
|
51.266
|
48.734
|
13.924
|
15.190
|
41.139
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
97.257
|
0.535
|
0.773
|
0.123
|
0.255
|
0.621
|
0.101
|
0.536
|
0.000
|
424.397
|
242.513
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-9.524
|
— |
-10.212
|
— | — |
No JSON data available for plots.