Hg_chrom7_TN10mRNA_13404
Organism: Heterodera glycines Gene Locus: chr7:1430033-1432717 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.385 | 1.092 | 0.954 | 0.381 | 1.565 | 0.708 | 0.658 | 0.691 | 2.087 | 1.008 | 1.925 | 1.462 | 1.458 | 0.531 | 0.564 | 0.71 | 0.996 | 1.214 | 0.85 | 1.056 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12641
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKFEVNAGDTVKIVKEKIK
|
— | — | — | — | — |
0.728
|
0.007
|
0.000
|
— |
0.630
|
0.255
|
0.019
|
0.517
|
0.171
|
0.160
|
0.057
|
0.003
|
0.191
|
0.314
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000607
|
3.000
|
4.000
|
Hsc_gene_10893.t1;Hsc_gene_26409.t1;Hsc_gene_3268.t1;Hsc_gene_6041.t1
|
— | — |
P0CG70.1 Polyubiquitin [Neurospora crassa OR74A]
|
KAG7499340.1 polyubiquitin-C [Solea senegalensis]
|
XP_048632603
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.841|GO:0110165_0.841|GO:0005622_0.756|GO:0016020_0.702|GO:0043226_0.665|GO:0008150_0.662|GO:0005737_0.652|GO:0043229_0.650|GO:0043227_0.601|GO:0043231_0.595|GO:0003674_0.583
|
IPR000626+32-112_36-115_43-112_118-191_118-194_120-191_196-264_196-267_199-264+|IPR029071+37-112_116-193_198-267+
|
SM00213+36-115_118-194_196-267+
|
PF00240+43-112_120-191_199-264+Ubiquitin_family
|
— |
PTHR10621+32-112+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
41749.510
|
8.391
|
5.500
|
31.492
|
11.326
|
50.000
|
50.000
|
16.851
|
14.641
|
41.713
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
56.176
|
1.209
|
21.864
|
253.046
|
19.316
|
3.463
|
1.822
|
2.658
|
153.511
|
16.872
|
75.431
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.941
|
7.555
|
3.643
|
-3.754
|
-2.462
|
— | — | — | — | — | — | — | — |