Hg_chrom7_TN10mRNA_13405
Organism: Heterodera glycines Gene Locus: chr7:1441885-1444625 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.204 | 1.122 | 0.957 | 0.302 | 1.827 | 0.675 | 0.888 | 0.877 | 2.047 | 1.067 | 1.595 | 1.806 | 1.218 | 0.422 | 0.716 | 0.689 | 1.294 | 1.196 | 0.675 | 0.645 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12642
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRHSVNVKTTDTVETLKKR
|
— | — | — | — | — |
0.772
|
0.113
|
0.000
|
— |
0.639
|
0.261
|
0.005
|
0.505
|
0.069
|
0.118
|
0.051
|
0.004
|
0.077
|
0.385
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000607
|
3.000
|
4.000
|
Hsc_gene_10893.t1;Hsc_gene_26409.t1;Hsc_gene_3268.t1;Hsc_gene_6041.t1
|
— | — |
P0CG70.1 Polyubiquitin [Neurospora crassa OR74A]
|
XP_001637624.1 ubiquitin [Nematostella vectensis];EDO45561.1 predicted protein [Nematostella vectensis]
|
CEG62903
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.831|GO:0110165_0.823|GO:0005622_0.719|GO:0016020_0.685|GO:0008150_0.681|GO:0043226_0.626|GO:0005737_0.607|GO:0043229_0.601|GO:0003674_0.594|GO:0043227_0.572|GO:0043231_0.555
|
IPR000626+30-115_32-120_53-119_122-193_122-196_126-193+|IPR029071+43-119_121-194+
|
SM00213+32-120_122-196+
|
PF00240+53-119_126-193+Ubiquitin_family
|
— |
PTHR10621+43-119+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
26024.970
|
5.469
|
-3.000
|
32.018
|
9.211
|
52.193
|
47.807
|
15.789
|
16.228
|
42.982
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
450.072
|
31.968
|
90.785
|
1345.025
|
99.580
|
23.613
|
6.361
|
17.142
|
1301.159
|
387.769
|
779.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.278
|
5.257
|
3.997
|
-3.788
|
-2.061
|
-1.899
|
— | — | — | — | — | — | — |