Hg_chrom7_TN10mRNA_13408
Organism: Heterodera glycines Gene Locus: chr7:1494049-1494696 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.214 | 1.284 | 1.673 | 0.423 | 1.431 | 0.944 | 0.73 | 1.227 | 1.909 | 1.161 | 1.301 | 1.804 | 0.852 | 0.708 | 0.626 | 0.613 | 1.408 | 0.93 | 0.944 | 0.722 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12645
|
— | — |
1.444
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.864
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.675
|
0.149
|
0.018
|
0.508
|
0.186
|
0.170
|
0.047
|
0.001
|
0.137
|
0.321
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004510
|
2.000
|
1.000
|
Hsc_gene_24006.t1
|
Hsc_gene_16392.t1;Hsc_gene_24006.t1
|
— |
P0CG70.1 Polyubiquitin [Neurospora crassa OR74A]
|
XP_051903749.1 polyubiquitin isoform X20 [Hippocampus zosterae]
|
KAH1038316
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.803|GO:0110165_0.793|GO:0005622_0.734|GO:0008150_0.658|GO:0016020_0.625|GO:0043226_0.604|GO:0003674_0.594|GO:0043229_0.594|GO:0005737_0.592|GO:0043227_0.556|GO:0043231_0.547
|
IPR000626+2-79_2-82_17-47_83-162_83-163+|IPR029071+18-80_83-153+
|
SM00213+2-82_83-162+
|
PF00240+17-47+Ubiquitin_family
|
— |
PTHR10621+20-79+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
18646.140
|
4.591
|
-8.000
|
31.902
|
9.202
|
53.988
|
46.012
|
14.110
|
17.791
|
46.626
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
8.388
|
0.149
|
0.911
|
48.311
|
2.412
|
0.747
|
1.216
|
1.946
|
1.028
|
15.042
|
9.036
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.166
|
5.888
|
-4.327
|
— | — | — | — | — |
5.460
|
— | — | — |
No JSON data available for plots.