Hg_chrom7_TN10mRNA_13411
Organism: Heterodera glycines Gene Locus: chr7:1504166-1506635 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.422 | 1.014 | 1.409 | 0.334 | 1.493 | 1.118 | 0.865 | 1.332 | 1.668 | 1.178 | 1.174 | 1.709 | 1.211 | 0.698 | 0.791 | 0.623 | 1.072 | 0.991 | 0.745 | 0.855 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12648
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
LGEV
|
— | — | — | — | — |
0.655
|
0.445
|
0.000
|
— |
0.631
|
0.228
|
0.014
|
0.549
|
0.244
|
0.193
|
0.035
|
0.005
|
0.110
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004510
|
2.000
|
1.000
|
Hsc_gene_24006.t1
|
Hsc_gene_24006.t1
|
— |
P0CG70.1 Polyubiquitin [Neurospora crassa OR74A]
|
CAH1758541.1 731_t:CDS:1 [Entrophospora sp. SA101];CAJ0634987.1 6869_t:CDS:1 [Entrophospora sp. SA101];CAJ0756524.1 20469_t:CDS:1 [Entrophospora sp. SA101];CAJ0828382.1 4479_t:CDS:1 [Entrophospora sp. SA101];CAJ0896008.1 13760_t:CDS:1 [Entrophospora sp. SA101]
|
CAD6215189
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.788|GO:0110165_0.785|GO:0005622_0.717|GO:0008150_0.665|GO:0016020_0.647|GO:0003674_0.616|GO:0043226_0.613|GO:0005737_0.603|GO:0043229_0.593|GO:0043227_0.563|GO:0043231_0.550
|
IPR000626+3-84_7-87_22-84_88-164_88-167_185-261_187-256_198-256_263-335_263-336_265-335_337-413_348-407+|IPR029071+23-85_88-167_187-257_262-335_345-412+
|
SM00213+7-87_88-167_185-261_263-336_337-413+
|
PF00240+22-84_198-256_265-335+Ubiquitin_family|PF14560+348-407+Ubiquitin-like_domain
|
— |
PTHR10621+25-84+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-413
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
47076.470
|
4.779
|
-15.500
|
30.993
|
10.896
|
50.605
|
49.395
|
14.286
|
16.707
|
45.036
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
597.032
|
3.375
|
187.054
|
114.598
|
33.269
|
7.528
|
4.252
|
11.604
|
1802.192
|
1124.742
|
1415.078
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.567
|
4.951
|
-0.598
|
-1.822
|
-2.128
|
— | — |
-1.306
|
— |
-3.796
|
-4.785
|
— | — |